Farzad Farnoud

Proceedings of the IEEE International Symposium on Information Theory, 2023

Constrained Code for Data Storage in DNA via Nanopore Sequencing.

[BibT_eX]

[DOI]

Kallie Whritenour

Mete Civelek

Proceedings of the 57th Asilomar Conference on Signals, Systems, and Computers, ACSSC 2023, Pacific Grove, CA, USA, October 29, 2023

A Statistical Analysis of Duplication Errors in the Nanopore Sequencing Channel.

[BibT_eX]

[DOI]

Sarvin Motamen

Proceedings of the 57th Asilomar Conference on Signals, Systems, and Computers, ACSSC 2023, Pacific Grove, CA, USA, October 29, 2023

2022

Error-Correcting Codes for Short Tandem Duplication and Edit Errors.

[BibT_eX]

[DOI]

IEEE Trans. Inf. Theory, 2022

Data Deduplication With Random Substitutions.

[BibT_eX]

[DOI]

IEEE Trans. Inf. Theory, 2022

Active Ranking without Strong Stochastic Transitivity.

[BibT_eX]

[DOI]

Proceedings of the Advances in Neural Information Processing Systems 35: Annual Conference on Neural Information Processing Systems 2022, 2022

Correcting multiple short duplication and substitution errors.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Symposium on Information Theory, 2022

Universal Compression of Large Alphabets with Constrained Compressors.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Symposium on Information Theory, 2022

Permutation Codes for Correcting a Burst of at Most $t$ Deletions.

[BibT_eX]

[DOI]

Proceedings of the 58th Annual Allerton Conference on Communication, 2022

Adaptive Sampling for Heterogeneous Rank Aggregation from Noisy Pairwise Comparisons.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Artificial Intelligence and Statistics, 2022

2021

Error-Correcting Codes for Noisy Duplication Channels.

[BibT_eX]

[DOI]

IEEE Trans. Inf. Theory, 2021

Correcting deletion errors in DNA data storage with enzymatic synthesis.

[BibT_eX]

[DOI]

Proceedings of the IEEE Information Theory Workshop, 2021

Non-binary Codes for Correcting a Burst of at Most 2 Deletions.

[BibT_eX]

[DOI]

Shuche Wang

Jin Sima

Proceedings of the IEEE International Symposium on Information Theory, 2021

Error-correcting codes for short tandem duplications and at most $p$ substitutions.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Symposium on Information Theory, 2021

Asymptotic Analysis of Data Deduplication with a Constant Number of Substitutions.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Symposium on Information Theory, 2021

2020

Single-Error Detection and Correction for Duplication and Substitution Channels.

[BibT_eX]

[DOI]

IEEE Trans. Inf. Theory, 2020

Evolution of $k$ -Mer Frequencies and Entropy in Duplication and Substitution Mutation Systems.

[BibT_eX]

[DOI]

IEEE Trans. Inf. Theory, 2020

Error-correcting Codes for Short Tandem Duplication and Substitution Errors.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Symposium on Information Theory, 2020

Coding for Optimized Writing Rate in DNA Storage.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Symposium on Information Theory, 2020

Efficient Search of Circular Repeats and MicroDNA Reintegration in DNA Sequences.

[BibT_eX]

[DOI]

Proceedings of the 20th IEEE International Conference on Bioinformatics and Bioengineering, 2020

Rank Aggregation via Heterogeneous Thurstone Preference Models.

[BibT_eX]

[DOI]

Proceedings of the Thirty-Fourth AAAI Conference on Artificial Intelligence, 2020

2019

Estimation of duplication history under a stochastic model for tandem repeats.

[BibT_eX]

[DOI]

BMC Bioinform., December, 2019

The Entropy Rate of Some Pólya String Models.

[BibT_eX]

[DOI]

Ohad Elishco

IEEE Trans. Inf. Theory, 2019

Reconciling Similar Sets of Data.

[BibT_eX]

[DOI]

Ryan Gabrys

IEEE Trans. Commun., 2019

Solving the Maximum Independent Set Problem using Coupled Relaxation Oscillators.

[BibT_eX]

[DOI]

Mohammad Khairul Bashar

Richard Hrdy

Antik Mallick

Nikhil Shukla

Proceedings of the Device Research Conference, 2019

Finite-Time Behavior of k-mer Frequencies and Waiting Times in Noisy-Duplication Systems.

[BibT_eX]

[DOI]

Proceedings of the 53rd Asilomar Conference on Signals, Systems, and Computers, 2019

2018

Evolution of N-Gram Frequencies Under Duplication and Substitution Mutations.

[BibT_eX]

[DOI]

Proceedings of the 2018 IEEE International Symposium on Information Theory, 2018

2017

Duplication-Correcting Codes for Data Storage in the DNA of Living Organisms.

[BibT_eX]

[DOI]

IEEE Trans. Inf. Theory, 2017

Capacity and Expressiveness of Genomic Tandem Duplication.

[BibT_eX]

[DOI]

IEEE Trans. Inf. Theory, 2017

Duplication Distance to the Root for Binary Sequences.

[BibT_eX]

[DOI]

Noga Alon

IEEE Trans. Inf. Theory, 2017

Computing similarity distances between rankings.

[BibT_eX]

[DOI]

Gregory J. Puleo

Lili Su

Discret. Appl. Math., 2017

Noise and uncertainty in string-duplication systems.

[BibT_eX]

[DOI]

Proceedings of the 2017 IEEE International Symposium on Information Theory, 2017

Reconciling similar sets.

[BibT_eX]

[DOI]

Ryan Gabrys

Proceedings of the 55th Annual Allerton Conference on Communication, 2017

2016

The Capacity of String-Duplication Systems.

[BibT_eX]

[DOI]

IEEE Trans. Inf. Theory, 2016

Bounds for Permutation Rate-Distortion.

[BibT_eX]

[DOI]

IEEE Trans. Inf. Theory, 2016

Codes Correcting Erasures and Deletions for Rank Modulation.

[BibT_eX]

[DOI]

IEEE Trans. Inf. Theory, 2016

Approximate sorting of data streams with limited storage.

[BibT_eX]

[DOI]

Eitan Yaakobi

J. Comb. Optim., 2016

MetaCRAM: an integrated pipeline for metagenomic taxonomy identification and compression.

[BibT_eX]

[DOI]

Venugopal V. Veeravalli

BMC Bioinform., 2016

The capacity of some Pólya string models.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Symposium on Information Theory, 2016

On the duplication distance of binary strings.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Symposium on Information Theory, 2016

2015

HyDRA: gene prioritization via hybrid distance-score rank aggregation.

[BibT_eX]

[DOI]

Minji Kim

Bioinform., 2015

A stochastic model for genomic interspersed duplication.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Symposium on Information Theory, 2015

2014

An Axiomatic Approach to Constructing Distances for Rank Comparison and Aggregation.

[BibT_eX]

[DOI]

IEEE Trans. Inf. Theory, 2014

Multipermutation Codes in the Ulam Metric for Nonvolatile Memories.

[BibT_eX]

[DOI]

IEEE J. Sel. Areas Commun., 2014

The Capacity of String-Replication Systems.

[BibT_eX]

[DOI]

CoRR, 2014

Rate-Distortion for Ranking with Incomplete Information.

[BibT_eX]

[DOI]

CoRR, 2014

Similarity distances between permutations.

[BibT_eX]

[DOI]

Lili Su

Proceedings of the 2014 IEEE International Symposium on Information Theory, Honolulu, HI, USA, June 29, 2014

Single-deletion-correcting codes over permutations.

[BibT_eX]

[DOI]

Proceedings of the 2014 IEEE International Symposium on Information Theory, Honolulu, HI, USA, June 29, 2014

Codes correcting erasures and deletions for rank modulation.

[BibT_eX]

[DOI]

Proceedings of the 2014 IEEE International Symposium on Information Theory, Honolulu, HI, USA, June 29, 2014

Multipermutation codes in the Ulam metric.

[BibT_eX]

[DOI]

Proceedings of the 2014 IEEE International Symposium on Information Theory, Honolulu, HI, USA, June 29, 2014

2013

Error-Correction in Flash Memories via Codes in the Ulam Metric.

[BibT_eX]

[DOI]

Vitaly Skachek

IEEE Trans. Inf. Theory, 2013

Computing Similarity Distances Between Rankings.

[BibT_eX]

[DOI]

Lili Su

CoRR, 2013

Aggregating rankings with positional constraints.

[BibT_eX]

[DOI]

Proceedings of the 2013 IEEE Information Theory Workshop, 2013

Weighted rank aggregation via relaxed integer programming.

[BibT_eX]

[DOI]

Fardad Raisali

Proceedings of the 2013 IEEE International Symposium on Information Theory, 2013

Building consensus via iterative voting.

[BibT_eX]

[DOI]

Proceedings of the 2013 IEEE International Symposium on Information Theory, 2013

MetaPar: Metagenomic sequence assembly via iterative reclassification.

[BibT_eX]

[DOI]

Venugopal V. Veeravalli

Proceedings of the IEEE Global Conference on Signal and Information Processing, 2013

Gene prioritization via weighted Kendall rank aggregation.

[BibT_eX]

[DOI]

Proceedings of the 5th IEEE International Workshop on Computational Advances in Multi-Sensor Adaptive Processing, 2013

A general framework for distributed vote aggregation.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2013

2012

Sorting of Permutations by Cost-Constrained Transpositions.

[BibT_eX]

[DOI]

IEEE Trans. Inf. Theory, 2012

A Novel Distance-Based Approach to Constrained Rank Aggregation

[BibT_eX]

[DOI]

Behrouz Touri

CoRR, 2012

Nonuniform Vote Aggregation Algorithms

[BibT_eX]

[DOI]

Behrouz Touri

CoRR, 2012

Rank modulation for translocation error correction.

[BibT_eX]

[DOI]

Vitaly Skachek

Proceedings of the 2012 IEEE International Symposium on Information Theory, 2012

Alternating Markov chains for distribution estimation in the presence of errors.

[BibT_eX]

[DOI]

Narayana P. Santhanam

Proceedings of the 2012 IEEE International Symposium on Information Theory, 2012

2011

Decomposing permutations via cost-constrained transpositions.

[BibT_eX]

[DOI]

S. M. Sadegh Tabatabaei Yazdi

Proceedings of the 2011 IEEE International Symposium on Information Theory Proceedings, 2011

2010

On the multimessage capacity region for undirected ring networks.

[BibT_eX]

[DOI]

IEEE Trans. Inf. Theory, 2010

A graphical model for computing the minimum cost transposition distance.

[BibT_eX]

[DOI]

Proceedings of the 2010 IEEE Information Theory Workshop, 2010

2009

Small-sample distribution estimation over sticky channels.

[BibT_eX]

[DOI]

Narayana P. Santhanam

Proceedings of the IEEE International Symposium on Information Theory, 2009

Reliable Broadcast of Safety Messages in Vehicular Ad Hoc Networks.

[BibT_eX]

[DOI]

S. M. Sadegh Tabatabaei Yazdi

Shahrokh Valaee

Proceedings of the INFOCOM 2009. 28th IEEE International Conference on Computer Communications, 2009

2007

A Multimessage Capacity Region for Undirected Ring Networks.

[BibT_eX]

[DOI]

Serap A. Savari