Fatemeh Almodaresi

According to our database, Fatemeh Almodaresi authored at least 11 papers between 2017 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

An incrementally updatable and scalable system for large-scale sequence search using the Bentley-Saxe transformation.

Fatemeh Almodaresi, Jamshed Khan, Sergey Madaminov, Michael Ferdman, Rob Johnson, Prashant Pandey, Rob Patro

Bioinform., 2022

2021

PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index.

Fatemeh Almodaresi, Mohsen Zakeri, Rob Patro

Bioinform., November, 2021

2020

Algorithms and Data Structures for Indexing, Querying, and Analyzing Large Collections of sequencing Data in the presence or Absence of a Reference.

Fatemeh Almodaresi

PhD thesis, 2020

An Efficient, Scalable, and Exact Representation of High-Dimensional Color Information Enabled Using de Bruijn Graph Search.

Fatemeh Almodaresi, Prashant Pandey, Michael Ferdman, Rob Johnson, Rob Patro

J. Comput. Biol., 2020

2019

An Efficient, Scalable and Exact Representation of High-Dimensional Color Information Enabled via de Bruijn Graph Search.

Fatemeh Almodaresi, Prashant Pandey, Michael Ferdman, Rob Johnson, Rob Patro

Proceedings of the Research in Computational Molecular Biology, 2019

2018

Grouper: graph-based clustering and annotation for improved de novo transcriptome analysis.

Laraib Malik, Fatemeh Almodaresi, Rob Patro

Bioinform., 2018

A space and time-efficient index for the compacted colored de Bruijn graph.

Fatemeh Almodaresi, Hirak Sarkar, Avi Srivastava, Rob Patro

Bioinform., 2018

Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index.

Prashant Pandey, Fatemeh Almodaresi, Michael A. Bender, Michael Ferdman, Rob Johnson, Rob Patro

Proceedings of the Research in Computational Molecular Biology, 2018

2017

Improved data-driven likelihood factorizations for transcript abundance estimation.

Mohsen Zakeri, Avi Srivastava, Fatemeh Almodaresi, Rob Patro

Bioinform., 2017

Rainbowfish: A Succinct Colored de Bruijn Graph Representation.

Fatemeh Almodaresi, Prashant Pandey, Rob Patro

Proceedings of the 17th International Workshop on Algorithms in Bioinformatics, 2017

On the Distribution of Lexical Features at Multiple Levels of Analysis.

Fatemeh Almodaresi, Lyle H. Ungar, Vivek Kulkarni, Mohsen Zakeri, Salvatore Giorgi, H. Andrew Schwartz

Proceedings of the 55th Annual Meeting of the Association for Computational Linguistics, 2017