Gail L. Rosen

Comput. Biol. Medicine, 2022

MetaMutationalSigs: comparison of mutational signature refitting results made easy.

[BibT_eX]

[DOI]

Palash Pandey

Sanjeevani Arora

Bioinform., 2022

Semi-supervised and Incremental VSEARCH for Metagenomic Classification.

[BibT_eX]

[DOI]

Proceedings of the IEEE Symposium Series on Computational Intelligence, 2022

2021

Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2021

Incremental and Semi-Supervised Learning of 16S-rRNA Genes For Taxonomic Classification.

[BibT_eX]

[DOI]

Proceedings of the IEEE Symposium Series on Computational Intelligence, 2021

Incremental & Semi-Supervised Learning for Functional Analysis of Protein Sequences.

[BibT_eX]

[DOI]

Proceedings of the IEEE Symposium Series on Computational Intelligence, 2021

2020

Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2020

Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life.

[BibT_eX]

[DOI]

Zhengqiao Zhao

Alexandru Cristian

BMC Bioinform., 2020

Visualizing and Annotating Protein Sequences using A Deep Neural Network.

[BibT_eX]

[DOI]

Zhengqiao Zhao

Proceedings of the 54th Asilomar Conference on Signals, Systems, and Computers, 2020

Spatiotemporal Tracking of SARS-CoV-2 Variants using informative subtype markers and association graphs.

[BibT_eX]

[DOI]

Ananya Sen Gupta

Zhengqiao Zhao

Proceedings of the 54th Asilomar Conference on Signals, Systems, and Computers, 2020

2019

16S rRNA sequence embeddings: Meaningful numeric feature representations of nucleotide sequences that are convenient for downstream analyses.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2019

Workshop on Microbiomics, Metagenomics, and Metabolomics.

[BibT_eX]

[DOI]

Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018

A Sequential Learning Approach for Scaling Up Filter-Based Feature Subset Selection.

[BibT_eX]

[DOI]

IEEE Trans. Neural Networks Learn. Syst., 2018

Extensions to Online Feature Selection Using Bagging and Boosting.

[BibT_eX]

[DOI]

IEEE Trans. Neural Networks Learn. Syst., 2018

2017

Incremental Author Name Disambiguation for Scientific Citation Data.

[BibT_eX]

[DOI]

Proceedings of the 2017 IEEE International Conference on Data Science and Advanced Analytics, 2017

2015

A Bootstrap Based Neyman-Pearson Test for Identifying Variable Importance.

[BibT_eX]

[DOI]

IEEE Trans. Neural Networks Learn. Syst., 2015

Fizzy: feature subset selection for metagenomics.

[BibT_eX]

[DOI]

BMC Bioinform., 2015

2014

POGO-DB - a database of pairwise-comparisons of genomes and conserved orthologous genes.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2014

Characterizing the Empirical Distribution of Prokaryotic Genome <i>n</i>-mers in the Presence of Nullomers.

[BibT_eX]

[DOI]

J. Comput. Biol., 2014

Domain adaptation bounds for multiple expert systems under concept drift.

[BibT_eX]

[DOI]

Proceedings of the 2014 International Joint Conference on Neural Networks, 2014

Scaling a neyman-pearson subset selection approach via heuristics for mining massive data.

[BibT_eX]

[DOI]

Proceedings of the 2014 IEEE Symposium on Computational Intelligence and Data Mining, 2014

Feature subset selection for inferring relative importance of taxonomy.

[BibT_eX]

[DOI]

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013

Quikr: a method for rapid reconstruction of bacterial communities via compressive sensing.

[BibT_eX]

[DOI]

David Koslicki

Simon Foucart

Bioinform., 2013

Incremental learning of new classes from unbalanced data.

[BibT_eX]

[DOI]

Proceedings of the 2013 International Joint Conference on Neural Networks, 2013

Discounted expert weighting for concept drift.

[BibT_eX]

[DOI]

Proceedings of the 2013 IEEE Symposium on Computational Intelligence in Dynamic and Uncertain Environments, 2013

2012

Exploiting the Functional and Taxonomic Structure of Genomic Data by Probabilistic Topic Modeling.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Inquiry-Based Learning Through Image Processing [dsp Education].

[BibT_eX]

[DOI]

Jason Silverman

IEEE Signal Process. Mag., 2012

Transductive learning algorithms for nonstationary environments.

[BibT_eX]

[DOI]

Proceedings of the 2012 International Joint Conference on Neural Networks (IJCNN), 2012

Forensic identification with environmental samples.

[BibT_eX]

[DOI]

Proceedings of the 2012 IEEE International Conference on Acoustics, 2012

Information theoretic feature selection for high dimensional metagenomic data.

[BibT_eX]

[DOI]

Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012

2011

Information-theoretic approaches to SVM feature selection for metagenome read classification.

[BibT_eX]

[DOI]

Comput. Biol. Chem., 2011

Combining gene prediction methods to improve metagenomic gene annotation.

[BibT_eX]

[DOI]

Non G. Yok

BMC Bioinform., 2011

NBC: the Naïve Bayes Classification tool webserver for taxonomic classification of metagenomic reads.

[BibT_eX]

[DOI]

Erin R. Reichenberger

Aaron M. Rosenfeld

Bioinform., 2011

Ordering samples along environmental gradients using particle swarm optimization.

[BibT_eX]

[DOI]

Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

2010

Benchmarking BLAST Accuracy of Genus/Phyla Classification of Metagenomic Reads.

[BibT_eX]

[DOI]

Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010

Neural network-based taxonomic clustering for metagenomics.

[BibT_eX]

[DOI]

Proceedings of the International Joint Conference on Neural Networks, 2010

A probabilistic topic-connection model for automatic image annotation.

[BibT_eX]

[DOI]

Proceedings of the 19th ACM Conference on Information and Knowledge Management, 2010

Probabilistic topic modeling for genomic data interpretation.

[BibT_eX]

[DOI]

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

Comparison of Gene Prediction Programs for Metagenomic Data.

[BibT_eX]

[DOI]

Non Yok

Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

The Effect of Sequence Error and Partial Training Data on BLAST Accuracy.

[BibT_eX]

[DOI]

Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

2009

Implementation of a Hebbian chemoreceptor model for diffusive source localization.

[BibT_eX]

[DOI]

Paul E. Hasler

Mark T. Smith

Biosyst., 2009

2008

Metagenome Fragment Classification Using N-Mer Frequency Profiles.

[BibT_eX]

[DOI]

Adv. Bioinformatics, 2008

Validating models of bacterial chemotaxis by simulating the random motility coefficient.

[BibT_eX]

[DOI]

Zhiyu Wang

MinJun Kim

Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008

2006

Chemical Source Localization in Unknown Turbulence Using the Cross-Correlation Method.

[BibT_eX]

[DOI]

Paul E. Hasler

Proceedings of the 2006 IEEE International Conference on Acoustics Speech and Signal Processing, 2006

2003

Investigation of coding structure in DNA.

[BibT_eX]

[DOI]

Jeffrey D. Moore

Proceedings of the 2003 IEEE International Conference on Acoustics, 2003

2002

Automatic loudspeaker directivity control for sound field reconstruction.

[BibT_eX]

[DOI]