Terence P. Speed

According to our database, Terence P. Speed authored at least 38 papers between 1996 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

Spectral PCA for MANOVA and data over binary trees.

Terence P. Speed, Damien G. Hicks

J. Multivar. Anal., 2022

2020

Finding a suitable library size to call variants in RNA-Seq.

Anna Quaglieri, Christoffer Flensburg, Terence P. Speed, Ian J. Majewski

BMC Bioinform., 2020

2019

Maps of variability in cell lineage trees.

Damien G. Hicks, Terence P. Speed, Mohammed Yassin, Sarah M. Russell

PLoS Comput. Biol., 2019

DECENT: differential expression with capture efficiency adjustmeNT for single-cell RNA-seq data.

Chengzhong Ye, Terence P. Speed, Agus Salim

Bioinform., 2019

Evaluation of cross-platform and interlaboratory concordance via consensus modelling of genomic measurements.

Timothy J. Peters, Hugh J. French, Stephen T. Bradford, Ruth Pidsley, Clare Stirzaker, Hilal Varinli, Shalima Nair, Wenjia Qu, Jenny Song, Katherine A. Giles, Aaron L. Statham, Helen Speirs, Terence P. Speed, Susan J. Clark

Bioinform., 2019

2015

Systematic noise degrades gene co-expression signals but can be corrected.

Saskia Freytag, Johann Gagnon-Bartsch, Terence P. Speed, Melanie Bahlo

BMC Bioinform., 2015

2014

Combining calls from multiple somatic mutation-callers.

Su Yeon Kim, Laurent Jacob, Terence P. Speed

BMC Bioinform., 2014

2013

Comparing somatic mutation-callers: Beyond Venn diagrams.

Su Yeon Kim, Terence P. Speed

BMC Bioinform., 2013

2012

SRMA: an R package for resequencing array data analysis.

Nianxiang Zhang, Yan Xu, Martin O'Hely, Terence P. Speed, Curt Scharfe, Wenyi Wang

Bioinform., 2012

Bayesian Inference of Signaling Network Topology in a Cancer Cell Line.

Steven M. Hill, Yiling Lu, Jennifer Molina, Laura Heiser, Paul T. Spellman, Terence P. Speed, Joe W. Gray, Gordon B. Mills, Sach Mukherjee

Bioinform., 2012

2011

Identification of rare DNA variants in mitochondrial disorders with improved array-based sequencing.

Wenyi Wang, Peidong Shen, Sreedevi Thiyagarajan, Shengrong Lin, Curtis J. Palm, Rita Horvath, Thomas Klopstock, David Cutler, Lynn Pique, Iris Schrijver, Ronald W. Davis, Michael Mindrinos, Terence P. Speed, Curt Scharfe

Nucleic Acids Res., 2011

An integrative bioinformatic predictor of protein sub-cellular localisation in malaria.

Ben J. Woodcroft, Robert Radloff, Lee M. Yeoh, Kristie-Lee Scanlon, Maria A. Doyle, Giel G. van Dooren, Geoffrey I. McFadden, Christopher J. Tonkin, Terence P. Speed, Stuart A. Ralph

BMC Bioinform., 2011

2010

Methods for Allocating Ambiguous Short-reads.

Doron Lipson, Terence P. Speed, Margaret Taub

Commun. Inf. Syst., 2010

TumorBoost: Normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays.

Henrik Bengtsson, Pierre Neuvial, Terence P. Speed

BMC Bioinform., 2010

2009

Background Adjustment for DNA Microarrays Using a Database of Microarray Experiments.

Yunxia Sui, Xiaoyue Zhao, Terence P. Speed, Zhijin Wu

J. Comput. Biol., 2009

Differential splicing using whole-transcript microarrays.

Mark D. Robinson, Terence P. Speed

BMC Bioinform., 2009

Sparse combinatorial inference with an application in cancer biology.

Sach Mukherjee, Steven Pelech, Richard M. Neve, Wen-Lin Kuo, Safiyyah Ziyad, Paul T. Spellman, Joe W. Gray, Terence P. Speed

Bioinform., 2009

A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6.

Henrik Bengtsson, Pratyaksha Wirapati, Terence P. Speed

Bioinform., 2009

A single-sample method for normalizing and combining full-resolution copy numbers from multiple platforms, labs and analysis methods.

Henrik Bengtsson, Amrita Ray, Paul T. Spellman, Terence P. Speed

Bioinform., 2009

2008

Rejoinder.

Julia Brettschneider, François Collin, Benjamin M. Bolstad, Terence P. Speed

Technometrics, 2008

Quality Assessment for Short Oligonucleotide Microarray Data.

Julia Brettschneider, François Collin, Benjamin M. Bolstad, Terence P. Speed

Technometrics, 2008

FIRMA: a method for detection of alternative splicing from exon array data.

E. Purdom, Ken M. Simpson, Mark D. Robinson, J. G. Conboy, A. V. Lapuk, Terence P. Speed

Bioinform., 2008

Estimation and assessment of raw copy numbers at the single locus level.

Henrik Bengtsson, Rafael A. Irizarry, Benilton S. Carvalho, Terence P. Speed

Bioinform., 2008

2007

A dynamic programming approach for the alignment of signal peaks in multiple gas chromatography-mass spectrometry experiments.

Mark D. Robinson, David P. De Souza, Woon Wai Keen, Eleanor C. Saunders, Malcolm J. McConville, Terence P. Speed, Vladimir A. Likic

BMC Bioinform., 2007

A comparison of Affymetrix gene expression arrays.

Mark D. Robinson, Terence P. Speed

BMC Bioinform., 2007

2006

A genotype calling algorithm for affymetrix SNP arrays.

Nusrat Rabbee, Terence P. Speed

Bioinform., 2006

2005

Finding Short DNA Motifs Using Permuted Markov Models.

Xiaoyue Zhao, Haiyan Huang, Terence P. Speed

J. Comput. Biol., 2005

A systematic approach for comprehensive T-cell epitope discovery using peptide libraries.

Tim Beißbarth, Jason A. Tye-Din, Gordon K. Smyth, Terence P. Speed, Robert P. Anderson

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

2004

A benchmark for Affymetrix GeneChip expression measures.

Leslie Cope, Rafael A. Irizarry, Harris A. Jaffee, Zhijin Wu, Terence P. Speed

Bioinform., 2004

2003

Machine learning in low-level microarray analysis.

Benjamin I. P. Rubinstein, Jon D. McAuliffe, Simon Cawley, Marimuthu Palaniswami, Kotagiri Ramamohanarao, Terence P. Speed

SIGKDD Explor., 2003

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias.

Benjamin M. Bolstad, Rafael A. Irizarry, Magnus Åstrand, Terence P. Speed

Bioinform., 2003

Low-level analyses of microarray data.

Terence P. Speed

Proceedings of the Sventh Annual International Conference on Computational Biology, 2003

2002

An HMM model for coiled-coil domains and a comparison with PSSM-based predictions.

Mauro Delorenzi, Terence P. Speed

Bioinform., 2002

2001

Analysis of CDNA Microarray Images.

Yee Hwa Yang, Michael J. Buckley, Terence P. Speed

Briefings Bioinform., 2001

2000

DNA Sequencing with Transposons.

Simon Cawley, Terence P. Speed

J. Comput. Biol., 2000

1997

An Algorithm for Haplotype Analysis.

Shili Lin, Terence P. Speed

J. Comput. Biol., 1997

Variations on a theme of Lander and Waterman (abstract).

Terence P. Speed

Proceedings of the First Annual International Conference on Research in Computational Molecular Biology, 1997

1996

Over- and Underrepresentation of Short DNA Words in Herpesvirus Genomes.

Ming-Ying Leung, G. M. Marsh, Terence P. Speed

J. Comput. Biol., 1996