Terence P. Speed

According to our database1, Terence P. Speed authored at least 38 papers between 1996 and 2022.

Collaborative distances:

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Dataset
Other 

Links

On csauthors.net:

Bibliography

2022
Spectral PCA for MANOVA and data over binary trees.
J. Multivar. Anal., 2022

2020
Finding a suitable library size to call variants in RNA-Seq.
BMC Bioinform., 2020

2019
Maps of variability in cell lineage trees.
PLoS Comput. Biol., 2019

DECENT: differential expression with capture efficiency adjustmeNT for single-cell RNA-seq data.
Bioinform., 2019

Evaluation of cross-platform and interlaboratory concordance via consensus modelling of genomic measurements.
Bioinform., 2019

2015
Systematic noise degrades gene co-expression signals but can be corrected.
BMC Bioinform., 2015

2014
Combining calls from multiple somatic mutation-callers.
BMC Bioinform., 2014

2013
Comparing somatic mutation-callers: Beyond Venn diagrams.
BMC Bioinform., 2013

2012
SRMA: an R package for resequencing array data analysis.
Bioinform., 2012

Bayesian Inference of Signaling Network Topology in a Cancer Cell Line.
Bioinform., 2012

2011
Identification of rare DNA variants in mitochondrial disorders with improved array-based sequencing.
Nucleic Acids Res., 2011

An integrative bioinformatic predictor of protein sub-cellular localisation in malaria.
BMC Bioinform., 2011

2010
Methods for Allocating Ambiguous Short-reads.
Commun. Inf. Syst., 2010

TumorBoost: Normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays.
BMC Bioinform., 2010

2009
Background Adjustment for DNA Microarrays Using a Database of Microarray Experiments.
J. Comput. Biol., 2009

Differential splicing using whole-transcript microarrays.
BMC Bioinform., 2009

Sparse combinatorial inference with an application in cancer biology.
Bioinform., 2009

A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6.
Bioinform., 2009

A single-sample method for normalizing and combining full-resolution copy numbers from multiple platforms, labs and analysis methods.
Bioinform., 2009

2008
Rejoinder.
Technometrics, 2008

Quality Assessment for Short Oligonucleotide Microarray Data.
Technometrics, 2008

FIRMA: a method for detection of alternative splicing from exon array data.
Bioinform., 2008

Estimation and assessment of raw copy numbers at the single locus level.
Bioinform., 2008

2007
A dynamic programming approach for the alignment of signal peaks in multiple gas chromatography-mass spectrometry experiments.
BMC Bioinform., 2007

A comparison of Affymetrix gene expression arrays.
BMC Bioinform., 2007

2006
A genotype calling algorithm for affymetrix SNP arrays.
Bioinform., 2006

2005
Finding Short DNA Motifs Using Permuted Markov Models.
J. Comput. Biol., 2005

A systematic approach for comprehensive T-cell epitope discovery using peptide libraries.
Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

2004
A benchmark for Affymetrix GeneChip expression measures.
Bioinform., 2004

2003
Machine learning in low-level microarray analysis.
SIGKDD Explor., 2003

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias.
Bioinform., 2003

Low-level analyses of microarray data.
Proceedings of the Sventh Annual International Conference on Computational Biology, 2003

2002
An HMM model for coiled-coil domains and a comparison with PSSM-based predictions.
Bioinform., 2002

2001
Analysis of CDNA Microarray Images.
Briefings Bioinform., 2001

2000
DNA Sequencing with Transposons.
J. Comput. Biol., 2000

1997
An Algorithm for Haplotype Analysis.
J. Comput. Biol., 1997

Variations on a theme of Lander and Waterman (abstract).
Proceedings of the First Annual International Conference on Research in Computational Molecular Biology, 1997

1996
Over- and Underrepresentation of Short DNA Words in Herpesvirus Genomes.
J. Comput. Biol., 1996


  Loading...