Greg Finak

According to our database, Greg Finak authored at least 11 papers between 2005 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

New interpretable machine-learning method for single-cell data reveals correlates of clinical response to cancer immunotherapy.

Evan Greene, Greg Finak, Leonard A. D'Amico, Nina Bhardwaj, Candice D. Church, Chihiro Morishima, Nirasha Ramchurren, Janis M. Taube, Paul T. Nghiem, Martin A. Cheever, Steven P. Fling, Raphael Gottardo

Patterns, 2021

2018

Selective Clustering Annotated using Modes of Projections.

Evan Greene, Greg Finak, Raphael Gottardo

CoRR, 2018

ggCyto: next generation open-source visualization software for cytometry.

Phu Van, Wenxin Jiang, Raphael Gottardo, Greg Finak

Bioinform., 2018

2015

flowDensity: reproducing manual gating of flow cytometry data by automated density-based cell population identification.

Mehrnoush Malek, Mohammad Jafar Taghiyar, Lauren Chong, Greg Finak, Raphael Gottardo, Ryan Remy Brinkman

Bioinform., 2015

2014

Modeling Bi-modality Improves Characterization of Cell Cycle on Gene Expression in Single Cells.

Andrew McDavid, Lucas Dennis, Patrick Danaher, Greg Finak, Michael Krouse, Alice Wang, Philippa Webster, Joseph Beechem, Raphael Gottardo

PLoS Comput. Biol., 2014

OpenCyto: An Open Source Infrastructure for Scalable, Robust, Reproducible, and Automated, End-to-End Flow Cytometry Data Analysis.

Greg Finak, Jacob Frelinger, Wenxin Jiang, Evan W. Newell, John Ramey, Mark M. Davis, Spyros A. Kalams, Stephen C. De Rosa, Raphael Gottardo

PLoS Comput. Biol., 2014

2013

Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments.

Andrew McDavid, Greg Finak, Pratip K. Chattopadhyay, Maria Dominguez, Laurie Lamoreaux, Steven S. Ma, Mario Roederer, Raphael Gottardo

Bioinform., 2013

2012

QUAliFiER: An automated pipeline for quality assessment of gated flow cytometry data.

Greg Finak, Wenxin Jiang, Jorge Pardo, Adam Asare, Raphael Gottardo

BMC Bioinform., 2012

2010

Optimizing Transformations for Automated, High Throughput Analysis of Flow Cytometry Data.

Greg Finak, Juan-Manuel Perez, Andrew Weng, Raphael Gottardo

BMC Bioinform., 2010

2009

Merging Mixture Components for Cell Population Identification in Flow Cytometry.

Greg Finak, Ali Bashashati, Ryan Remy Brinkman, Raphael Gottardo

Adv. Bioinformatics, 2009

2005

BIAS: Bioinformatics Integrated Application Software.

Greg Finak, N. Godin, Michael T. Hallett, François Pepin, Z. Rajabi, V. Srivastava, Z. Tang

Bioinform., 2005