Hamid Mohamadi

According to our database, Hamid Mohamadi authored at least 18 papers between 2008 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2022

ntHash2: recursive spaced seed hashing for nucleotide sequences.

Parham Kazemi, Johnathan Wong, Vladimir Nikolic, Hamid Mohamadi, René L. Warren, Inanç Birol

Bioinform., October, 2022

2020

Mismatch-tolerant, alignment-free sequence classification using multiple spaced seeds and multiindex Bloom filters.

Justin Chu, Hamid Mohamadi, Emre Erhan, Jeffery Tse, Readman Chiu, Sarah Yeo, Inanç Birol

Proc. Natl. Acad. Sci. USA, 2020

2019

ntEdit: scalable genome sequence polishing.

René L. Warren, Lauren Coombe, Hamid Mohamadi, Jessica Zhang, Barry Jaquish, Nathalie Isabel, Steven J. M. Jones, Jean Bousquet, Jörg Bohlmann, Inanç Birol

Bioinform., 2019

2018

Tigmint: correcting assembly errors using linked reads from large molecules.

Shaun D. Jackman, Lauren Coombe, Justin Chu, René L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Jörg Bohlmann, Steven J. M. Jones, Inanç Birol

BMC Bioinform., 2018

ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data.

Hamza Khan, Hamid Mohamadi, Benjamin P. Vandervalk, René L. Warren, Justin Chu, Inanç Birol

Bioinform., 2018

ntPack: A Software Package for Big Data in Genomics.

Inanç Birol, Hamid Mohamadi, Justin Chu

Proceedings of the 5th IEEE/ACM International Conference on Big Data Computing Applications and Technologies, 2018

2017

ntCard: a streaming algorithm for cardinality estimation in genomics data.

Hamid Mohamadi, Hamza Khan, Inanç Birol

Bioinform., 2017

Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art.

Justin Chu, Hamid Mohamadi, René L. Warren, Chen Yang, Inanç Birol

Bioinform., 2017

2016

ntHash: recursive nucleotide hashing.

Hamid Mohamadi, Justin Chu, Benjamin P. Vandervalk, Inanç Birol

Bioinform., 2016

2014

BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters.

Justin Chu, Sara Sadeghi, Anthony Raymond, Shaun D. Jackman, Ka Ming Nip, Richard Mar, Hamid Mohamadi, Yaron S. N. Butterfield, A. Gordon Robertson, Inanç Birol

Bioinform., 2014

Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph.

Benjamin P. Vandervalk, Shaun D. Jackman, Anthony Raymond, Hamid Mohamadi, Chen Yang, Dean A. Attali, Justin Chu, René L. Warren, Inanç Birol

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Spaced seed data structures.

Inanç Birol, Hamid Mohamadi, Anthony Raymond, Karthika Raghavan, Justin Chu, Benjamin P. Vandervalk, Shaun D. Jackman, René L. Warren

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013

BOND: Basic OligoNucleotide Design.

Lucian Ilie, Hamid Mohamadi, Geoffrey Brian Golding, William F. Smyth

BMC Bioinform., 2013

2011

Design and analysis of genetic fuzzy systems for intrusion detection in computer networks.

Mohammad Saniee Abadeh, Hamid Mohamadi, Jafar Habibi

Expert Syst. Appl., 2011

2009

A Novel Fuzzy Genetic Annealing Classification Approach.

Maziyar Baran Pouyan, Hamid Mohamadi, Mohammad Saniee Abadeh, Ali Foroughifar

Proceedings of the EMS 2009, 2009

Knowledge Discovery Using a New Interpretable Simulated Annealing Based Fuzzy Classification System.

Hamid Mohamadi, Jafar Habibi, Shahrouz Moaven

Proceedings of the First Asian Conference on Intelligent Information and Database Systems, 2009

2008

Data mining with a simulated annealing based fuzzy classification system.

Hamid Mohamadi, Jafar Habibi, Mohammad Saniee Abadeh, Hamid Saadi

Pattern Recognit., 2008

Misuse Intrusion Detection Using a Fuzzy-Metaheuristic Approach.

Hamid Mohamadi, Jafar Habibi, Mohammad Saniee Abadeh

Proceedings of the Second Asia International Conference on Modelling and Simulation, 2008