Shaun D. Jackman

According to our database, Shaun D. Jackman authored at least 12 papers between 2009 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2019

ORCA: a comprehensive bioinformatics container environment for education and research.

Shaun D. Jackman, Tatyana Mozgacheva, Susie Chen, Brendan O'Huiginn, Lance Bailey, Inanç Birol, Steven J. M. Jones

Bioinform., 2019

2018

Tigmint: correcting assembly errors using linked reads from large molecules.

Shaun D. Jackman, Lauren Coombe, Justin Chu, René L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Jörg Bohlmann, Steven J. M. Jones, Inanç Birol

BMC Bioinform., 2018

ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers.

Lauren Coombe, Jessica Zhang, Benjamin P. Vandervalk, Justin Chu, Shaun D. Jackman, Inanç Birol, René L. Warren

BMC Bioinform., 2018

2015

On the Representation of De Bruijn Graphs.

Rayan Chikhi, Antoine Limasset, Shaun Jackman, Jared T. Simpson, Paul Medvedev

J. Comput. Biol., 2015

Sealer: a scalable gap-closing application for finishing draft genomes.

Daniel Paulino, René L. Warren, Benjamin P. Vandervalk, Anthony Raymond, Shaun D. Jackman, Inanç Birol

BMC Bioinform., 2015

KLEAT: Cleavage Site Analysis of Transcriptomes.

Inanç Birol, Anthony Raymond, Readman Chiu, Ka Ming Nip, Shaun D. Jackman, Maayan Kreitzman, T. Roderick Docking, Catherine A. Ennis, A. Gordon Robertson, Aly Karsan

Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

2014

BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters.

Justin Chu, Sara Sadeghi, Anthony Raymond, Shaun D. Jackman, Ka Ming Nip, Richard Mar, Hamid Mohamadi, Yaron S. N. Butterfield, A. Gordon Robertson, Inanç Birol

Bioinform., 2014

Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph.

Benjamin P. Vandervalk, Shaun D. Jackman, Anthony Raymond, Hamid Mohamadi, Chen Yang, Dean A. Attali, Justin Chu, René L. Warren, Inanç Birol

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Spaced seed data structures.

Inanç Birol, Hamid Mohamadi, Anthony Raymond, Karthika Raghavan, Justin Chu, Benjamin P. Vandervalk, Shaun D. Jackman, René L. Warren

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013

Assembling the 20 Gb white spruce (<i>Picea glauca</i>) genome from whole-genome shotgun sequencing data.

Inanç Birol, Anthony Raymond, Shaun D. Jackman, Stephen Pleasance, Robin Coope, Greg A. Taylor, Macaire Man Saint Yuen, Christopher I. Keeling, Dana Brand, Benjamin P. Vandervalk, Heather Kirk, Pawan Pandoh, Richard A. Moore, Yongjun Zhao, Andrew J. Mungall, Barry Jaquish, Alvin Yanchuk, Carol Ritland, Brian Boyle, Jean Bousquet, Kermit Ritland, John MacKay, Jörg Bohlmann, Steven J. M. Jones

Bioinform., 2013

2009

ABySS-Explorer: Visualizing Genome Sequence Assemblies.

Cydney B. Nielsen, Shaun D. Jackman, Inanç Birol, Steven J. M. Jones

IEEE Trans. Vis. Comput. Graph., 2009

<i>De novo</i> transcriptome assembly with ABySS.

Inanç Birol, Shaun D. Jackman, Cydney B. Nielsen, Jenny Q. Qian, Richard Varhol, Greg Stazyk, Ryan D. Morin, Yongjun Zhao, Martin Hirst, Jacqueline E. Schein, Douglas E. Horsman, Joseph M. Connors, Randy D. Gascoyne, Marco A. Marra, Steven J. M. Jones

Bioinform., 2009