Inanç Birol

According to our database1, Inanç Birol authored at least 41 papers between 2003 and 2021.

Collaborative distances:

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Other 

Links

Online presence:

On csauthors.net:

Bibliography

2021
HLA predictions from the bronchoalveolar lavage fluid and blood samples of eight COVID-19 patients at the pandemic onset.
Bioinform., 2021

2020
Mismatch-tolerant, alignment-free sequence classification using multiple spaced seeds and multiindex Bloom filters.
Proc. Natl. Acad. Sci. USA, 2020

Portable nanopore analytics: are we there yet?
Bioinform., 2020

ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs.
Bioinform., 2020

Fusion-Bloom: fusion detection in assembled transcriptomes.
Bioinform., 2020

ENANO: Encoder for NANOpore FASTQ files.
Bioinform., 2020

2019
ntEdit: scalable genome sequence polishing.
Bioinform., 2019

ORCA: a comprehensive bioinformatics container environment for education and research.
Bioinform., 2019

2018
Tigmint: correcting assembly errors using linked reads from large molecules.
BMC Bioinform., 2018

ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers.
BMC Bioinform., 2018

ARCS: scaffolding genome drafts with linked reads.
Bioinform., 2018

ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data.
Bioinform., 2018

GraphNER: Using Corpus Level Similarities and Graph Propagation for Named Entity Recognition.
Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium Workshops, 2018

ntPack: A Software Package for Big Data in Genomics.
Proceedings of the 5th IEEE/ACM International Conference on Big Data Computing Applications and Technologies, 2018

In-domain Context-aware Token Embeddings Improve Biomedical Named Entity Recognition.
Proceedings of the Ninth International Workshop on Health Text Mining and Information Analysis, 2018

2017
ntCard: a streaming algorithm for cardinality estimation in genomics data.
Bioinform., 2017

Kollector: transcript-informed, targeted de novo assembly of gene loci.
Bioinform., 2017

Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art.
Bioinform., 2017

2016
ntHash: recursive nucleotide hashing.
Bioinform., 2016

Theoretical analysis of the Minimum Sum of Squared Similarities sampling for Nyström-based spectral clustering.
Proceedings of the 2016 International Joint Conference on Neural Networks, 2016

Ensemble Minimum Sum of Squared Similarities sampling for Nyström-based spectral clustering.
Proceedings of the 2016 International Joint Conference on Neural Networks, 2016

Graph-based Semi-supervised Gene Mention Tagging.
Proceedings of the 15th Workshop on Biomedical Natural Language Processing, 2016

2015
Sealer: a scalable gap-closing application for finishing draft genomes.
BMC Bioinform., 2015

KLEAT: Cleavage Site Analysis of Transcriptomes.
Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

Sampling with Minimum Sum of Squared Similarities for Nystrom-Based Large Scale Spectral Clustering.
Proceedings of the Twenty-Fourth International Joint Conference on Artificial Intelligence, 2015

2014
BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters.
Bioinform., 2014

Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Spaced seed data structures.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013
Identifying cancer mutation targets across thousands of samples: MuteProc, a high throughput mutation analysis pipeline.
BMC Bioinform., 2013

Assembling the 20 Gb white spruce (<i>Picea glauca</i>) genome from whole-genome shotgun sequencing data.
Bioinform., 2013

2012
Dissect: detection and characterization of novel structural alterations in transcribed sequences.
Bioinform., 2012

Hive plots - rational approach to visualizing networks.
Briefings Bioinform., 2012

2011
Human variation database: an open-source database template for genomic discovery.
Bioinform., 2011

2010
LaneRuler: Automated Lane Tracking for DNA Electrophoresis Gel Images.
IEEE Trans Autom. Sci. Eng., 2010

Genomic analysis of a rare human tumor.
BMC Bioinform., 2010

Detection and characterization of novel sequence insertions using paired-end next-generation sequencing.
Bioinform., 2010

2009
ABySS-Explorer: Visualizing Genome Sequence Assemblies.
IEEE Trans. Vis. Comput. Graph., 2009

<i>De novo</i> transcriptome assembly with ABySS.
Bioinform., 2009

2008
Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies.
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

2005
Agent-based control of autocatalytic replicators in networks of reactors.
Comput. Chem. Eng., 2005

2003
Investigating the fermentation dynamics structure of recombinant yeast YPB-G.
Comput. Chem. Eng., 2003


  Loading...