Herman J. C. Berendsen

According to our database, Herman J. C. Berendsen authored at least 13 papers between 1987 and 2013.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of five.

2013

MPI Parallelization of Innovative DPD Thermostats.

Nicolae Goga, Herman J. C. Berendsen, Svetlana Baoukina, Sunita Andreea Moga, George Dragoi, Anton Hadar, B. Paviloiu

Proceedings of the IEEE International Conference on Healthcare Informatics, 2013

2011

Determining equilibrium constants for dimerization reactions from molecular dynamics simulations.

Djurre H. De Jong, Lars V. Schäfer, Alex H. de Vries, Siewert J. Marrink, Herman J. C. Berendsen, Helmut Grubmüller

J. Comput. Chem., 2011

2005

GROMACS: Fast, flexible, and free.

David van der Spoel, Erik Lindahl, Berk Hess, Gerrit Groenhof, Alan E. Mark, Herman J. C. Berendsen

J. Comput. Chem., 2005

1999

Simulation of slow reaction with quantum character: Neutral hydrolysis of carboxylic ester.

Marc F. Lensink, Janez Mavri, Herman J. C. Berendsen

J. Comput. Chem., 1999

Improving efficiency of large time-scale molecular dynamics simulations of hydrogen-rich systems.

K. Anton Feenstra, Berk Hess, Herman J. C. Berendsen

J. Comput. Chem., 1999

Molecular Dynamics Simulations: The Limits and Beyond.

Herman J. C. Berendsen

Proceedings of the Computational Molecular Dynamics: Challenges, Methods, Ideas, 1999

1997

LINCS: A linear constraint solver for molecular simulations.

Berk Hess, Henk Bekker, Herman J. C. Berendsen, Johannes G. E. M. Fraaije

J. Comput. Chem., 1997

A comparison of techniques for calculating protein essential dynamics.

Daan M. F. van Aalten, Bert L. de Groot, John B. C. Findlay, Herman J. C. Berendsen, Andrea Amadei

J. Comput. Chem., 1997

1996

Simultaneous integration of mixed quantum-classical systems by density matrix evolution equations using interaction representation and adaptive time step integrator.

Marc F. Lensink, Janez Mavri, Herman J. C. Berendsen

J. Comput. Chem., 1996

The Amfisbaena: A Parallel Sup computer System Based on i860 as a Generic Platform for Molecular Dynamics Simulation.

Rudi van Drunen, Cees van Teylingen, Marcel Kroontje, Herman J. C. Berendsen

Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 1996

1992

Conformational search by potential energy annealing: Algorithm and application to cyclosporin A.

René C. van Schaik, Wilfred F. van Gunsteren, Herman J. C. Berendsen

J. Comput. Aided Mol. Des., 1992

1988

Dynamic simulation as an essential tool in molecular modeling.

Herman J. C. Berendsen

J. Comput. Aided Mol. Des., 1988

1987

Thermodynamic cycle integration by computer simulation as a tool for obtaining free energy differences in molecular chemistry.

Wilfred F. van Gunsteren, Herman J. C. Berendsen

J. Comput. Aided Mol. Des., 1987