K. Anton Feenstra

According to our database1, K. Anton Feenstra authored at least 30 papers between 1999 and 2021.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Online presence:

On csauthors.net:

Bibliography

2021
Predicting the relationships between gut microbiota and mental disorders with knowledge graphs.
Health Inf. Sci. Syst., 2021

2020
A framework for exhaustive modelling of genetic interaction patterns using Petri nets.
Bioinform., 2020

2019
Protein Three-Dimensional Structure Prediction.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern.
PLoS Comput. Biol., 2019

SeRenDIP: SEquential REmasteriNg to DerIve profiles for fast and accurate predictions of PPI interface positions.
Bioinform., 2019

Tailor-made multiple sequence alignments using the PRALINE 2 alignment toolkit.
Bioinform., 2019

2018
Motif-Aware PRALINE: Improving the alignment of motif regions.
PLoS Comput. Biol., 2018

Training for translation between disciplines: a philosophy for life and data sciences curricula.
Bioinform., 2018

2017
Seeing the trees through the forest: sequence-based homo- and heteromeric protein-protein interaction sites prediction using random forest.
Bioinform., 2017

2016
BioASF: a framework for automatically generating executable pathway models specified in BioPAX.
Bioinform., 2016

2015
Sequence specificity between interacting and non-interacting homologs identifies interface residues - a homodimer and monomer use case.
BMC Bioinform., 2015

Explaining disease using big data: How valid is your pathway?
Proceedings of the 2015 International Conference on High Performance Computing & Simulation, 2015

2014
Coarse-grained versus atomistic simulations: realistic interaction free energies for real proteins.
Bioinform., 2014

Petri Nets Are a Biologist's Best Friend.
Proceedings of the Formal Methods in Macro-Biology - First International Conference, 2014

2013
Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model.
Bioinform., 2013

Bioinformatics and Systems Biology: bridging the gap between heterogeneous student backgrounds.
Briefings Bioinform., 2013

Building Executable Biological Pathway Models Automatically from BioPAX.
Proceedings of the 3rd International Workshop on Linked Science 2013, 2013

2012
Enabling grand-canonical Monte Carlo: Extending the flexibility of GROMACS through the GromPy python interface module.
J. Comput. Chem., 2012

2010
Multi-Harmony: detecting functional specificity from sequence alignment.
Nucleic Acids Res., 2010

2009
Structure and function analysis of flexible alignment regions in proteins.
BMC Bioinform., 2009

Executing multicellular differentiation: quantitative predictive modelling of C.elegans vulval development.
Bioinform., 2009

Executing multicellular differentiation: quantitative predictive modelling of <i>C.elegans</i> vulval development.
Bioinform., 2009

What Can Formal Methods Bring to Systems Biology?
Proceedings of the FM 2009: Formal Methods, 2009

2008
The meaning of alignment: lessons from structural diversity.
BMC Bioinform., 2008

Multi-RELIEF: a method to recognize specificity determining residues from multiple sequence alignments using a Machine-Learning approach for feature weighting.
Bioinform., 2008

PRALINE<sup>TM</sup>: a strategy for improved multiple alignment of transmembrane proteins.
Bioinform., 2008

Design Issues for Qualitative Modelling of Biological Cells with Petri Nets.
Proceedings of the Formal Methods in Systems Biology, First International Workshop, 2008

2007
Sequence harmony: detecting functional specificity from alignments.
Nucleic Acids Res., 2007

2006
A Feature Selection Algorithm for Detecting Subtype Specific Functional Sites from Protein Sequences for Smad Receptor Binding.
Proceedings of the Fifth International Conference on Machine Learning and Applications, 2006

1999
Improving efficiency of large time-scale molecular dynamics simulations of hydrogen-rich systems.
J. Comput. Chem., 1999


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