Erik Lindahl

According to our database1, Erik Lindahl authored at least 23 papers between 2005 and 2018.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.



In proceedings 
PhD thesis 




e-Science in Scandinavia - The Case of the Swedish e-Science Research Center.
Informatik Spektrum, 2018

Copernicus, a hybrid dataflow and peer-to-peer scientific computing platform for efficient large-scale ensemble sampling.
Future Generation Comp. Syst., 2017

The Molecular Basis of Polyunsaturated Fatty Acid Interactions with the Shaker Voltage-Gated Potassium Channel.
PLoS Computational Biology, 2016

An efficient and extensible format, library, and API for binary trajectory data from molecular simulations.
Journal of Computational Chemistry, 2014

Tackling Exascale Software Challenges in Molecular Dynamics Simulations with GROMACS.
Proceedings of the Solving Software Challenges for Exascale, 2014

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit.
Bioinformatics, 2013

Molecular Mechanism for the Dual Alcohol Modulation of Cys-loop Receptors.
PLoS Computational Biology, 2012

Improved model quality assessment using ProQ2.
BMC Bioinformatics, 2012

Preparing Scientific Application Software for Exascale Computing.
Proceedings of the Applied Parallel and Scientific Computing, 2012

Copernicus: a new paradigm for parallel adaptive molecular dynamics.
Proceedings of the Conference on High Performance Computing Networking, 2011

Poster: 3D tixels: a highly efficient algorithm for gpu/cpu-acceleration of molecular dynamics on heterogeneous parallel architectures.
Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis, 2011

Atomic-Resolution Simulations Predict a Transition State for Vesicle Fusion Defined by Contact of a Few Lipid Tails.
PLoS Computational Biology, 2010

Modeling Anesthetic Binding Sites within the Glycine Alpha One Receptor Based on Prokaryotic Ion Channel Templates: The Problem with TM4.
Journal of Chemical Information and Modeling, 2010

A high-performance parallel-generalized born implementation enabled by tabulated interaction rescaling.
Journal of Computational Chemistry, 2010

Model quality assessment for membrane proteins.
Bioinformatics, 2010

Conformational Changes and Slow Dynamics through Microsecond Polarized Atomistic Molecular Simulation of an Integral Kv1.2 Ion Channel.
PLoS Computational Biology, 2009

Effect of Cobratoxin Binding on the Normal Mode Vibration within Acetylcholine Binding Protein.
Journal of Chemical Information and Modeling, 2008

Normal-Mode Analysis of the Glycine Alpha1 Receptor by Three Separate Methods.
Journal of Chemical Information and Modeling, 2007

Speeding up parallel GROMACS on high-latency networks.
Journal of Computational Chemistry, 2007

NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis.
Nucleic Acids Research, 2006

PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics.
Nucleic Acids Research, 2006

Improved GROMACS Scaling on Ethernet Switched Clusters.
Proceedings of the Recent Advances in Parallel Virtual Machine and Message Passing Interface, 2006

GROMACS: Fast, flexible, and free.
Journal of Computational Chemistry, 2005