Hisanori Kiryu

According to our database, Hisanori Kiryu authored at least 21 papers between 2005 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2022

MODEC: an unsupervised clustering method integrating omics data for identifying cancer subtypes.

Yanting Zhang, Hisanori Kiryu

Briefings Bioinform., 2022

2020

Estimation of population genetic parameters using an EM algorithm and sequence data from experimental evolution populations.

Yasuhiro Kojima, Hirotaka Matsumoto, Hisanori Kiryu

Bioinform., 2020

2019

reactIDR: evaluation of the statistical reproducibility of high-throughput structural analyses towards a robust RNA structure prediction.

Risa Kawaguchi, Hisanori Kiryu, Junichi Iwakiri, Jun Sese

BMC Bioinform., 2019

TMRS: an algorithm for computing the time to the most recent substitution event from a multiple alignment column.

Hisanori Kiryu, Yuto Ichikawa, Yasuhiro Kojima

Algorithms Mol. Biol., 2019

2017

SCODE: an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation.

Hirotaka Matsumoto, Hisanori Kiryu, Chikara Furusawa, Minoru S. H. Ko, Shigeru B. H. Ko, Norio Gouda, Tetsutaro Hayashi, Itoshi Nikaido

Bioinform., 2017

2016

Rtools: a web server for various secondary structural analyses on single RNA sequences.

Michiaki Hamada, Yukiteru Ono, Hisanori Kiryu, Kengo Sato, Yuki Kato, Tsukasa Fukunaga, Ryota Mori, Kiyoshi Asai

Nucleic Acids Res., 2016

SCOUP: a probabilistic model based on the Ornstein-Uhlenbeck process to analyze single-cell expression data during differentiation.

Hirotaka Matsumoto, Hisanori Kiryu

BMC Bioinform., 2016

Parallel computation of genome-scale RNA secondary structure to detect structural constraints on human genome.

Risa Kawaguchi, Hisanori Kiryu

BMC Bioinform., 2016

2013

Generalized Centroid Estimators in Bioinformatics

Michiaki Hamada, Hisanori Kiryu, Wataru Iwasaki, Kiyoshi Asai

CoRR, 2013

2012

Rchange: algorithms for computing energy changes of RNA secondary structures in response to base mutations.

Hisanori Kiryu, Kiyoshi Asai

Bioinform., 2012

2011

A detailed investigation of accessibilities around target sites of siRNAs and miRNAs.

Hisanori Kiryu, Goro Terai, Osamu Imamura, Hiroyuki Yoneyama, Kenji Suzuki, Kiyoshi Asai

Bioinform., 2011

Sufficient statistics and expectation maximization algorithms in phylogenetic tree models.

Hisanori Kiryu

Bioinform., 2011

2009

CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score.

Michiaki Hamada, Kengo Sato, Hisanori Kiryu, Toutai Mituyama, Kiyoshi Asai

Bioinform., 2009

Predictions of RNA secondary structure by combining homologous sequence information.

Michiaki Hamada, Kengo Sato, Hisanori Kiryu, Toutai Mituyama, Kiyoshi Asai

Bioinform., 2009

Prediction of RNA secondary structure using generalized centroid estimators.

Michiaki Hamada, Hisanori Kiryu, Kengo Sato, Toutai Mituyama, Kiyoshi Asai

Bioinform., 2009

2008

Software.ncrna.org: web servers for analyses of RNA sequences.

Kiyoshi Asai, Hisanori Kiryu, Michiaki Hamada, Yasuo Tabei, Kengo Sato, Hiroshi Matsui, Yasubumi Sakakibara, Goro Terai, Toutai Mituyama

Nucleic Acids Res., 2008

A fast structural multiple alignment method for long RNA sequences.

Yasuo Tabei, Hisanori Kiryu, Taishin Kin, Kiyoshi Asai

BMC Bioinform., 2008

Rfold: an exact algorithm for computing local base pairing probabilities.

Hisanori Kiryu, Taishin Kin, Kiyoshi Asai

Bioinform., 2008

2007

Murlet: a practical multiple alignment tool for structural RNA sequences.

Hisanori Kiryu, Yasuo Tabei, Taishin Kin, Kiyoshi Asai

Bioinform., 2007

Robust prediction of consensus secondary structures using averaged base pairing probability matrices.

Hisanori Kiryu, Taishin Kin, Kiyoshi Asai

Bioinform., 2007

2005

Extracting relations between promoter sequences and their strengths from microarray data.

Hisanori Kiryu, Taku Oshima, Kiyoshi Asai

Bioinform., 2005