Yasuo Tabei

According to our database1, Yasuo Tabei authored at least 53 papers between 2006 and 2020.

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Bibliography

2020
PARASOL: a hybrid approximation approach for scalable frequent itemset mining in streaming data.
J. Intell. Inf. Syst., 2020

A compressed dynamic self-index for highly repetitive text collections.
Inf. Comput., 2020

Space-Efficient Feature Maps for String Alignment Kernels.
Data Science and Engineering, 2020

Faster Queries on BWT-runs Compressed Indexes.
CoRR, 2020

Succinct Trit-array Trie for Scalable Trajectory Similarity Search.
CoRR, 2020

Enumeration of LCP values, LCP intervals and Maximal repeats in BWT-runs Bounded Space.
CoRR, 2020

2019
Dynamic Path-Decomposed Tries.
CoRR, 2019

Statistically Discriminative Sub-trajectory Mining.
CoRR, 2019

Approximate-Closed-Itemset Mining for Streaming Data Under Resource Constraint.
CoRR, 2019

Network-based characterization of drug-protein interaction signatures with a space-efficient approach.
BMC Syst. Biol., 2019

Predicting drug-induced transcriptome responses of a wide range of human cell lines by a novel tensor-train decomposition algorithm.
Bioinform., 2019

Statistically Discriminative Sub-trajectory Mining with Multiple Testing Correction.
Proceedings of the 27th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, 2019

LZRR: LZ77 Parsing with Right Reference.
Proceedings of the Data Compression Conference, 2019

Conversion from RLBWT to LZ77.
Proceedings of the 30th Annual Symposium on Combinatorial Pattern Matching, 2019

b-Bit Sketch Trie: Scalable Similarity Search on Integer Sketches.
Proceedings of the 2019 IEEE International Conference on Big Data (Big Data), 2019

2018
Scalable Alignment Kernels via Space-Efficient Feature Maps.
CoRR, 2018

Scalable Machine Learning on Compact Data Representations.
Proceedings of the International Symposium on Information Theory and Its Applications, 2018

Entire Regularization Path for Sparse Nonnegative Interaction Model.
Proceedings of the IEEE International Conference on Data Mining, 2018

A Dynamic Compressed Self-Index for Highly Repetitive Text Collections.
Proceedings of the 2018 Data Compression Conference, 2018

2017
Scalable Similarity Search for Molecular Descriptors.
Proceedings of the Similarity Search and Applications - 10th International Conference, 2017

Bayesian Dynamic Mode Decomposition.
Proceedings of the Twenty-Sixth International Joint Conference on Artificial Intelligence, 2017

2016
Simultaneous prediction of enzyme orthologs from chemical transformation patterns for de novo metabolic pathway reconstruction.
Bioinform., 2016

siEDM: An Efficient String Index and Search Algorithm for Edit Distance with Moves.
Algorithms, 2016

Scalable Partial Least Squares Regression on Grammar-Compressed Data Matrices.
Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2016

2015
Metabolome-scale de novo pathway reconstruction using regioisomer-sensitive graph alignments.
Bioinform., 2015

Online Self-Indexed Grammar Compression.
Proceedings of the String Processing and Information Retrieval, 2015

Access, Rank, and Select in Grammar-compressed Strings.
Proceedings of the Algorithms - ESA 2015, 2015

Queries on LZ-Bounded Encodings.
Proceedings of the 2015 Data Compression Conference, 2015

2014
Rank, select and access in grammar-compressed strings.
CoRR, 2014

Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach.
Bioinform., 2014

Improved ESP-index: A Practical Self-index for Highly Repetitive Texts.
Proceedings of the Experimental Algorithms - 13th International Symposium, 2014

Online Pattern Matching for String Edit Distance with Moves.
Proceedings of the String Processing and Information Retrieval, 2014

Finding Ambiguous Patterns on Grammar Compressed String.
Proceedings of the New Frontiers in Artificial Intelligence, 2014

Fully Online Grammar Compression in Constant Space.
Proceedings of the Data Compression Conference, 2014

2013
Scalable prediction of compound-protein interactions using minwise hashing.
BMC Syst. Biol., 2013

KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics.
BMC Syst. Biol., 2013

Inferring protein domains associated with drug side effects based on drug-target interaction network.
BMC Syst. Biol., 2013

Supervised de novo reconstruction of metabolic pathways from metabolome-scale compound sets.
Bioinform., 2013

Fully-Online Grammar Compression.
Proceedings of the String Processing and Information Retrieval, 2013

Succinct interval-splitting tree for scalable similarity search of compound-protein pairs with property constraints.
Proceedings of the 19th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2013

A Succinct Grammar Compression.
Proceedings of the Combinatorial Pattern Matching, 24th Annual Symposium, 2013

2012
PoSSuM: a database of similar protein-ligand binding and putative pockets.
Nucleic Acids Res., 2012

Identification of chemogenomic features from drug-target interaction networks using interpretable classifiers.
Bioinform., 2012

Succinct Multibit Tree: Compact Representation of Multibit Trees by Using Succinct Data Structures in Chemical Fingerprint Searches.
Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012

Variable-Length Codes for Space-Efficient Grammar-Based Compression.
Proceedings of the String Processing and Information Retrieval, 2012

2011
Kernel-based Similarity Search in Massive Graph Databases with Wavelet Trees.
Proceedings of the Eleventh SIAM International Conference on Data Mining, 2011

LGM: Mining Frequent Subgraphs from Linear Graphs.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2011

2010
Single versus Multiple Sorting in All Pairs Similarity Search.
Proceedings of the 2nd Asian Conference on Machine Learning, 2010

2009
A local multiple alignment method for detection of non-coding RNA sequences.
Bioinform., 2009

2008
Software.ncrna.org: web servers for analyses of RNA sequences.
Nucleic Acids Res., 2008

A fast structural multiple alignment method for long RNA sequences.
BMC Bioinform., 2008

2007
Murlet: a practical multiple alignment tool for structural RNA sequences.
Bioinform., 2007

2006
SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments.
Bioinform., 2006


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