Michiaki Hamada
Orcid: 0000-0001-9466-1034
According to our database1,
Michiaki Hamada
authored at least 40 papers
between 2006 and 2023.
Collaborative distances:
Collaborative distances:
Timeline
Legend:
Book In proceedings Article PhD thesis Dataset OtherLinks
Online presence:
-
on orcid.org
On csauthors.net:
Bibliography
2023
Recent trends in RNA informatics: a review of machine learning and deep learning for RNA secondary structure prediction and RNA drug discovery.
Briefings Bioinform., July, 2023
GeoPhy: Differentiable Phylogenetic Inference via Geometric Gradients of Tree Topologies.
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023
2022
2021
Multi-resBind: a residual network-based multi-label classifier for in vivo RNA binding prediction and preference visualization.
BMC Bioinform., 2021
PBSIM2: a simulator for long-read sequencers with a novel generative model of quality scores.
Bioinform., 2021
Umibato: estimation of time-varying microbial interaction using continuous-time regression hidden Markov model.
Bioinform., 2021
2020
BMC Bioinform., 2020
2019
Estimating Energy Parameters for RNA Secondary Structure Predictions Using Both Experimental and Computational Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
Discovering novel mutation signatures by latent Dirichlet allocation with variational Bayes inference.
Bioinform., 2019
2018
A Novel Method for Assessing the Statistical Significance of RNA-RNA Interactions Between Two Long RNAs.
J. Comput. Biol., 2018
DeepM6ASeq: prediction and characterization of m6A-containing sequences using deep learning.
BMC Bioinform., 2018
Beyond similarity assessment: selecting the optimal model for sequence alignment via the Factorized Asymptotic Bayesian algorithm.
Bioinform., 2018
2017
Bioinform., 2017
RIblast: an ultrafast RNA-RNA interaction prediction system based on a seed-and-extension approach.
Bioinform., 2017
2016
Rtools: a web server for various secondary structural analyses on single RNA sequences.
Nucleic Acids Res., 2016
BMC Genom., 2016
2015
BMC Bioinform., December, 2015
Comput. Biol. Chem., 2015
2014
Briefings Bioinform., 2014
2013
Analysis of base-pairing probabilities of RNA molecules involved in protein-RNA interactions.
Bioinform., 2013
2012
A Classification of Bioinformatics Algorithms from the Viewpoint of Maximizing Expected Accuracy (MEA).
J. Comput. Biol., 2012
Direct Updating of an RNA Base-Pairing Probability Matrix with Marginal Probability Constraints.
J. Comput. Biol., 2012
2011
CentroidHomfold-LAST: accurate prediction of RNA secondary structure using automatically collected homologous sequences.
Nucleic Acids Res., 2011
Nucleic Acids Res., 2011
IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming.
Bioinform., 2011
Probabilistic alignments with quality scores: an application to short-read mapping toward accurate SNP/indel detection.
Bioinform., 2011
2010
J. Bioinform. Comput. Biol., 2010
BMC Bioinform., 2010
RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming.
Bioinform., 2010
2009
Nucleic Acids Res., 2009
CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score.
Bioinform., 2009
Bioinform., 2009
Bioinform., 2009
2008
Nucleic Acids Res., 2008
2006