Kengo Sato

According to our database, Kengo Sato authored at least 44 papers between 1996 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Recent trends in RNA informatics: a review of machine learning and deep learning for RNA secondary structure prediction and RNA drug discovery.

Kengo Sato, Michiaki Hamada

Briefings Bioinform., July, 2023

2022

Integer programming for selecting set of informative markers in paternity inference.

Soichiro Nishiyama, Kengo Sato, Ryutaro Tao

BMC Bioinform., 2022

Prediction of RNA secondary structure including pseudoknots for long sequences.

Kengo Sato, Yuki Kato

Briefings Bioinform., 2022

E.S.P.: Extra-Sensory Puck in Air Hockey using the Projection-Based Illusion.

Kengo Sato, Hiroki Terashima, Shin'ya Nishida, Yoshihiro Watanabe

Proceedings of the SIGGRAPH Asia 2022 Emerging Technologies, 2022

2021

Neural correlates of head restraint: Unsolicited neuronal activation and dopamine release.

Tomoo Inubushi, Masanori Ito, Yutaro Mori, Masami Futatsubashi, Kengo Sato, Shigeru Ito, Masamichi Yokokura, Tomomi Shinke, Yosuke Kameno, Akihiro Kakimoto, Toshihiko Kanno, Hiroyuki Okada, Yasuomi Ouchi, Etsuji Yoshikawa

NeuroImage, 2021

2018

Introduction to Selected Papers from GIW2018.

Jinyan Li, Kenta Nakai, Yun Zheng, Kengo Sato, Limsoon Wong

J. Bioinform. Comput. Biol., 2018

A max-margin training of RNA secondary structure prediction integrated with the thermodynamic model.

Manato Akiyama, Kengo Sato, Yasubumi Sakakibara

J. Bioinform. Comput. Biol., 2018

Convolutional neural network based on SMILES representation of compounds for detecting chemical motif.

Maya Hirohara, Yutaka Saito, Yuki Koda, Kengo Sato, Yasubumi Sakakibara

BMC Bioinform., 2018

2017

An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data.

Yuki Kato, Tomoya Mori, Kengo Sato, Shingo Maegawa, Hiroshi Hosokawa, Tatsuya Akutsu

Bioinform., 2017

2016

Rtools: a web server for various secondary structural analyses on single RNA sequences.

Michiaki Hamada, Yukiteru Ono, Hisanori Kiryu, Kengo Sato, Yuki Kato, Tsukasa Fukunaga, Ryota Mori, Kiyoshi Asai

Nucleic Acids Res., 2016

SHARAKU: an algorithm for aligning and clustering read mapping profiles of deep sequencing in non-coding RNA processing.

Mariko Tsuchiya, Kojiro Amano, Masaya Abe, Misato Seki, Sumitaka Hase, Kengo Sato, Yasubumi Sakakibara

Bioinform., 2016

2015

A Machine Learning Based Approach to de novo Sequencing of Glycans from Tandem Mass Spectrometry Spectrum.

Shotaro Kumozaki, Kengo Sato, Yasubumi Sakakibara

IEEE ACM Trans. Comput. Biol. Bioinform., 2015

2013

High-frame-rate LED display with pulse-width modulation by use of nonlinear clock.

Toyotaro Tokimoto, Kengo Sato, Shiro Suyama, Hirotsugu Yamamoto

Proceedings of the IEEE 2nd Global Conference on Consumer Electronics, 2013

2012

Endogenous Bioactive Peptides as Potential Biomarkers for Atherosclerotic Coronary Heart Disease.

Takuya Watanabe, Kengo Sato, Fumiko Itoh, Kohei Wakabayashi, Masayoshi Shichiri, Tsutomu Hirano

Sensors, 2012

Rtips: fast and accurate tools for RNA 2D structure prediction using integer programming.

Yuki Kato, Kengo Sato, Kiyoshi Asai, Tatsuya Akutsu

Nucleic Acids Res., 2012

An efficient algorithm for de novo predictions of biochemical pathways between chemical compounds.

Masaomi Nakamura, Tsuyoshi Hachiya, Yutaka Saito, Kengo Sato, Yasubumi Sakakibara

BMC Bioinform., 2012

DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition.

Kengo Sato, Yuki Kato, Tatsuya Akutsu, Kiyoshi Asai, Yasubumi Sakakibara

Bioinform., 2012

COPICAT: a software system for predicting interactions between proteins and chemical compounds.

Yasubumi Sakakibara, Tsuyoshi Hachiya, Miho Uchida, Nobuyoshi Nagamine, Yohei Sugawara, Masahiro Yokota, Masaomi Nakamura, Kris Popendorf, Takashi Komori, Kengo Sato

Bioinform., 2012

2011

CentroidHomfold-LAST: accurate prediction of RNA secondary structure using automatically collected homologous sequences.

Michiaki Hamada, Koichiro Yamada, Kengo Sato, Martin C. Frith, Kiyoshi Asai

Nucleic Acids Res., 2011

Improving the accuracy of predicting secondary structure for aligned RNA sequences.

Michiaki Hamada, Kengo Sato, Kiyoshi Asai

Nucleic Acids Res., 2011

Using binding Profiles to Predict binding sites of Target RNAs.

Unyanee Poolsap, Yuki Kato, Kengo Sato, Tatsuya Akutsu

J. Bioinform. Comput. Biol., 2011

Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures.

Yutaka Saito, Kengo Sato, Yasubumi Sakakibara

BMC Bioinform., 2011

IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming.

Kengo Sato, Yuki Kato, Michiaki Hamada, Tatsuya Akutsu, Kiyoshi Asai

Bioinform., 2011

2010

A Non-Parametric Bayesian Approach for Predicting RNA Secondary Structures.

Kengo Sato, Michiaki Hamada, Toutai Mituyama, Kiyoshi Asai, Yasubumi Sakakibara

J. Bioinform. Comput. Biol., 2010

Robust and accurate prediction of noncoding RNAs from aligned sequences.

Yutaka Saito, Kengo Sato, Yasubumi Sakakibara

BMC Bioinform., 2010

Prediction of RNA secondary structure by maximizing pseudo-expected accuracy.

Michiaki Hamada, Kengo Sato, Kiyoshi Asai

BMC Bioinform., 2010

RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming.

Yuki Kato, Kengo Sato, Michiaki Hamada, Yoshihide Watanabe, Kiyoshi Asai, Tatsuya Akutsu

Bioinform., 2010

Improvement of Structure Conservation Index with Centroid Estimators.

Yohei Okada, Kengo Sato, Yasubumi Sakakibara

Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010

Improved prediction of transcription binding sites from chromatin modification data.

Kengo Sato, Tom Whitington, Timothy L. Bailey, Paul Horton

Proceedings of the 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2010

2009

CENTROIDFOLD: a web server for RNA secondary structure prediction.

Kengo Sato, Michiaki Hamada, Kiyoshi Asai, Toutai Mituyama

Nucleic Acids Res., 2009

CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score.

Michiaki Hamada, Kengo Sato, Hisanori Kiryu, Toutai Mituyama, Kiyoshi Asai

Bioinform., 2009

Predictions of RNA secondary structure by combining homologous sequence information.

Michiaki Hamada, Kengo Sato, Hisanori Kiryu, Toutai Mituyama, Kiyoshi Asai

Bioinform., 2009

Prediction of RNA secondary structure using generalized centroid estimators.

Michiaki Hamada, Hisanori Kiryu, Kengo Sato, Toutai Mituyama, Kiyoshi Asai

Bioinform., 2009

Sequence and Structural Analyses for Functional Non-coding RNAs.

Yasubumi Sakakibara, Kengo Sato

Proceedings of the Algorithmic Bioprocesses, 2009

2008

Software.ncrna.org: web servers for analyses of RNA sequences.

Kiyoshi Asai, Hisanori Kiryu, Michiaki Hamada, Yasuo Tabei, Kengo Sato, Hiroshi Matsui, Yasubumi Sakakibara, Goro Terai, Toutai Mituyama

Nucleic Acids Res., 2008

Directed acyclic graph kernels for structural RNA analysis.

Kengo Sato, Toutai Mituyama, Kiyoshi Asai, Yasubumi Sakakibara

BMC Bioinform., 2008

2007

Stem Kernels for RNA Sequence Analyses.

Yasubumi Sakakibara, Kris Popendorf, Nana Ogawa, Kiyoshi Asai, Kengo Sato

J. Bioinform. Comput. Biol., 2007

Stem Kernels for RNA Sequence Analyses.

Yasubumi Sakakibara, Kiyoshi Asai, Kengo Sato

Proceedings of the Bioinformatics Research and Development, First International Conference, 2007

2005

Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.

Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara

Bioinform., 2005

RNA secondary structural alignment with conditional random fields.

Kengo Sato, Yasubumi Sakakibara

Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005

2003

Preferential Presentation of Japanese Near-synonyms using Definition Statements.

Hiroyuki Okamoto, Kengo Sato, Hiroaki Saito

Proceedings of the Second International Workshop on Paraphrasing, 2003

2002

Extracting Word Sequence Correspondences with Support Vector Machines.

Kengo Sato, Hiroaki Saito

Proceedings of the 19th International Conference on Computational Linguistics, 2002

1998

Maximum Entropy Model Learning of the Translation Rules.

Kengo Sato, Masakazu Nakanishi

Proceedings of the 36th Annual Meeting of the Association for Computational Linguistics and 17th International Conference on Computational Linguistics, 1998

1996

Segmenting Sentences into Linky Strings Using D-bigram Statistics.

Shiho Nobesawa, Junya Tsutsumi, Sun Da Jiang, Tomohisa Sano, Kengo Sato, Masakazu Nakanishi

Proceedings of the 16th International Conference on Computational Linguistics, 1996