Hongkai Ji

According to our database, Hongkai Ji authored at least 15 papers between 2001 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

EDClust: an EM-MM hybrid method for cell clustering in multiple-subject single-cell RNA sequencing.

Xin Wei, Ziyi Li, Hongkai Ji, Hao Wu

Bioinform., 2022

2021

Profiling Chromatin Accessibility at Single-cell Resolution.

Sarthak Sinha, Ansuman T. Satpathy, Weiqiang Zhou, Hongkai Ji, Jo A. Stratton, Arzina Jaffer, Nizar Bahlis, Sorana Morrissy, Jeff A. Biernaskie

Genom. Proteom. Bioinform., 2021

2017

Single-cell regulome data analysis by SCRAT.

Zhicheng Ji, Weiqiang Zhou, Hongkai Ji

Bioinform., 2017

2016

Single-Cell Co-expression Analysis Reveals Distinct Functional Modules, Co-regulation Mechanisms and Clinical Outcomes.

Jie Wang, Shuli Xia, Brian Arand, Heng Zhu, Raghu Machiraju, Kun Huang, Hongkai Ji, Jiang Qian

PLoS Comput. Biol., 2016

2013

ChIPXpress: using publicly available gene expression data to improve ChIP-seq and ChIP-chip target gene ranking.

George Wu, Hongkai Ji

BMC Bioinform., 2013

Gene set bagging for estimating the probability a statistically significant result will replicate.

Andrew E. Jaffe, John D. Storey, Hongkai Ji, Jeffrey T. Leek

BMC Bioinform., 2013

ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data.

George Wu, Jason T. Yustein, Matthew N. McCall, Michael J. Zilliox, Rafael A. Irizarry, Karen Zeller, Chi V. Dang, Hongkai Ji

Bioinform., 2013

2012

iASeq: integrating multiple chip-seq datasets for detecting allele-specific binding.

Yingying Wei, Xia Li, Qianfei Wang, Hongkai Ji

BMC Bioinform., 2012

2011

hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data.

Li Chen, George Wu, Hongkai Ji

Bioinform., 2011

Computational Analysis of ChIP-chip Data.

Hongkai Ji

Proceedings of the Handbook of Statistical Bioinformatics., 2011

2010

JAMIE: joint analysis of multiple ChIP-chip experiments.

Hao Wu, Hongkai Ji

Bioinform., 2010

2009

TileProbe: modeling tiling array probe effects using publicly available data.

Jennifer Toolan Judy, Hongkai Ji

Bioinform., 2009

2006

An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse.

Ryung S. Kim, Hongkai Ji, Wing Hung Wong

BMC Bioinform., 2006

2005

TileMap: create chromosomal map of tiling array hybridizations.

Hongkai Ji, Wing Hung Wong

Bioinform., 2005

2001

AsMamDB: an alternative splice database of mammals.

Hongkai Ji, Qing Zhou, Fang Wen, Huiyu Xia, Xin Lu, Yanda Li

Nucleic Acids Res., 2001