Andrew E. Jaffe

According to our database, Andrew E. Jaffe authored at least 13 papers between 2012 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

BiocMAP: a Bioconductor-friendly, GPU-accelerated pipeline for bisulfite-sequencing data.

Nicholas J. Eagles, Richard Wilton, Andrew E. Jaffe, Leonardo Collado-Torres

BMC Bioinform., December, 2023

2021

Predicting Mood Disorder Symptoms with Remotely Collected Videos Using an Interpretable Multimodal Dynamic Attention Fusion Network.

Tathagata Banerjee, Matthew Kollada, Pablo Gersberg, Oscar Rodriguez, Jane Tiller, Andrew E. Jaffe, John Reynders

CoRR, 2021

Correction to: SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor‑powered RNA‑seq analyses.

Nicholas J. Eagles, Emily E. Burke, Jacob Leonard, Brianna K. Barry, Joshua M. Stolz, Louise Huuki, BaDoi N. Phan, Violeta Larios Serrato, Everardo Gutiérrez-Millán, Israel Aguilar-Ordoñez, Andrew E. Jaffe, Leonardo Collado-Torres

BMC Bioinform., 2021

SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses.

Nicholas J. Eagles, Emily E. Burke, Jacob Leonard, Brianna K. Barry, Joshua M. Stolz, Louise Huuki, BaDoi N. Phan, Violeta Larios Serrato, Everardo Gutiérrez-Millán, Israel Aguilar-Ordoñez, Andrew E. Jaffe, Leonardo Collado-Torres

BMC Bioinform., 2021

2018

A Bayesian framework for multiple trait colocalization from summary association statistics.

Claudia Giambartolomei, Jimmy Zhenli Liu, Wen Zhang, Mads Hauberg, Huwenbo Shi, James Boocock, Joe Pickrell, Andrew E. Jaffe, The CommonMind Consortium, Bogdan Pasaniuc, Panos Roussos

Bioinform., 2018

2017

Rail-RNA: scalable analysis of RNA-seq splicing and coverage.

Abhinav Nellore, Leonardo Collado-Torres, Andrew E. Jaffe, José Alquicira-Hernández, Christopher Wilks, Jacob Pritt, James Morton, Jeffrey T. Leek, Ben Langmead

Bioinform., 2017

2016

Erratum to: Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis.

Andrew E. Jaffe, Thomas Hyde, Joel Kleinman, Daniel R. Weinberger, Joshua Chenoweth, Ronald McKay, Jeffrey T. Leek, Carlo Colantuoni

BMC Bioinform., 2016

2015

regionReport: Interactive reports for region-based analyses.

Leonardo Collado-Torres, Andrew E. Jaffe, Jeffrey T. Leek

F1000Research, 2015

Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis.

Andrew E. Jaffe, Thomas Hyde, Joel Kleinman, Daniel Weinbergern, Joshua Chenoweth, Ronald McKay, Jeffrey T. Leek, Carlo Colantuoni

BMC Bioinform., 2015

<i>Polyester</i>: simulating RNA-seq datasets with differential transcript expression.

Alyssa C. Frazee, Andrew E. Jaffe, Ben Langmead, Jeffrey T. Leek

Bioinform., 2015

2014

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.

Martin J. Aryee, Andrew E. Jaffe, Héctor Corrada Bravo, Christine Ladd-Acosta, Andrew P. Feinberg, Kasper D. Hansen, Rafael A. Irizarry

Bioinform., 2014

2013

Gene set bagging for estimating the probability a statistically significant result will replicate.

Andrew E. Jaffe, John D. Storey, Hongkai Ji, Jeffrey T. Leek

BMC Bioinform., 2013

2012

The sva package for removing batch effects and other unwanted variation in high-throughput experiments.

Jeffrey T. Leek, W. Evan Johnson, Hilary S. Parker, Andrew E. Jaffe, John D. Storey

Bioinform., 2012