Ziyi Li

According to our database, Ziyi Li authored at least 18 papers between 2017 and 2026.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2026

TUSCAN: Tumor segmentation and classification analysis in spatial transcriptomics.

Chenxuan Zang, Charles C. Guo, Yaohong Wang, Peng Wei, Ziyi Li

PLoS Comput. Biol., 2026

2025

PoweREST: Statistical power estimation for spatial transcriptomics experiments to detect differentially expressed genes between two conditions.

Lan Shui, Anirban Maitra, Ying Yuan, Ken Lau, Harsimran Kaur, Liang Li, Ziyi Li

PLoS Comput. Biol., 2025

2024

Regional analysis to delineate intrasample heterogeneity with RegionalST.

Yue Lyu, Chong Wu, Wei Sun, Ziyi Li

Bioinform., 2024

SCIntRuler: guiding the integration of multiple single-cell RNA-seq datasets with a novel statistical metric.

Yue Lyu, Steven H. Lin, Hao Wu, Ziyi Li

Bioinform., 2024

2023

A novel statistical method for decontaminating T-cell receptor sequencing data.

Ruoxing Li, Mehmet Altan, Alexandre Reuben, Ruitao Lin, John V. Heymach, Hai Tran, Runzhe Chen, Latasha Little, Shawna Hubert, Jianjun Zhang, Ziyi Li

Briefings Bioinform., July, 2023

A comprehensive assessment of cell type-specific differential expression methods in bulk data.

Guanqun Meng, Wen Tang, Emina Huang, Ziyi Li, Hao Feng

Briefings Bioinform., January, 2023

2022

A machine learning-based method for automatically identifying novel cells in annotating single-cell RNA-seq data.

Ziyi Li, Yizhuo Wang, Irene Ganan-Gomez, Simona Colla, Kim-Anh Do

Bioinform., October, 2022

CondiS: A conditional survival distribution-based method for censored data imputation overcoming the hurdle in machine learning-based survival analysis.

Yizhuo Wang, Christopher R. Flowers, Ziyi Li, Xuelin Huang

J. Biomed. Informatics, 2022

EDClust: an EM-MM hybrid method for cell clustering in multiple-subject single-cell RNA sequencing.

Xin Wei, Ziyi Li, Hongkai Ji, Hao Wu

Bioinform., 2022

CondiS web app: imputation of censored lifetimes for machine learning-based survival analysis.

Yizhuo Wang, Christopher R. Flowers, Ziyi Li, Xuelin Huang

Bioinform., 2022

NeuCA web server: a neural network-based cell annotation tool with web-app and GUI.

Daoyu Duan, Sijia He, Emina Huang, Ziyi Li, Hao Feng

Bioinform., 2022

A comprehensive comparison of supervised and unsupervised methods for cell type identification in single-cell RNA-seq.

Xiaobo Sun, Xiaochu Lin, Ziyi Li, Hao Wu

Briefings Bioinform., 2022

2021

Complete deconvolution of DNA methylation signals from complex tissues: a geometric approach.

Weiwei Zhang, Hao Wu, Ziyi Li

Bioinform., 2021

2020

Detection of differentially methylated CpG sites between tumor samples with uneven tumor purities.

Weiwei Zhang, Ziyi Li, Nana Wei, Hua-Jun Wu, Xiaoqi Zheng

Bioinform., 2020

Robust partial reference-free cell composition estimation from tissue expression.

Ziyi Li, Zhenxing Guo, Ying Cheng, Peng Jin, Hao Wu

Bioinform., 2020

2019

Distributed learning from multiple EHR databases: Contextual embedding models for medical events.

Ziyi Li, Kirk Roberts, Xiaoqian Jiang, Qi Long

J. Biomed. Informatics, 2019

Dissecting differential signals in high-throughput data from complex tissues.

Ziyi Li, Zhijin Wu, Peng Jin, Hao Wu

Bioinform., 2019

2017

Incorporating biological information in sparse principal component analysis with application to genomic data.

Ziyi Li, Sandra E. Safo, Qi Long

BMC Bioinform., 2017