Hongwu Ma

According to our database, Hongwu Ma authored at least 18 papers between 2001 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

CAVE: a cloud-based platform for analysis and visualization of metabolic pathways.

Zhitao Mao, Qianqian Yuan, Haoran Li, Yue Zhang, Yuanyuan Huang, Chunhe Yang, Ruoyu Wang, Yongfu Yang, Yalun Wu, Shihui Yang, Xiaoping Liao, Hongwu Ma

Nucleic Acids Res., July, 2023

2022

AutoESD: a web tool for automatic editing sequence design for genetic manipulation of microorganisms.

Yi Yang, Yufeng Mao, Ruoyu Wang, Haoran Li, Ye Liu, Haijiao Cheng, Zhenkun Shi, Yu Wang, Meng Wang, Ping Zheng, Xiaoping Liao, Hongwu Ma

Nucleic Acids Res., 2022

ERMer: a serverless platform for navigating, analyzing, and visualizing <i>Escherichia coli</i> regulatory landscape through graph database.

Zhitao Mao, Ruoyu Wang, Haoran Li, Yixin Huang, Qiang Zhang, Xiaoping Liao, Hongwu Ma

Nucleic Acids Res., 2022

ECRECer: Enzyme Commission Number Recommendation and Benchmarking based on Multiagent Dual-core Learning.

Zhenkun Shi, Qianqian Yuan, Ruoyu Wang, Hoaran Li, Xiaoping Liao, Hongwu Ma

CoRR, 2022

2015

Taxonomic and functional metagenomic analysis of anodic communities in two pilot-scale microbial fuel cells treating different industrial wastewaters.

Larisa Kiseleva, Sofya K. Garushyants, Hongwu Ma, David J. W. Simpson, Viatcheslav Fedorovich, Michael F. Cohen, Igor Goryanin

J. Integr. Bioinform., 2015

2013

A semi-automated genome annotation comparison and integration scheme.

Zhe Liu, Hongwu Ma, Igor Goryanin

BMC Bioinform., 2013

2010

Compartmentalization of the Edinburgh Human Metabolic Network.

Tong Hao, Hongwu Ma, Xue-Ming Zhao, Igor Goryanin

BMC Bioinform., 2010

2009

BioDiVinE: A Framework for Parallel Analysis of Biological Models

Jiri Barnat, Lubos Brim, Ivana Cerná, Sven Drazan, Jana Fabriková, Jan Láník, David Safránek, Hongwu Ma

Proceedings of the Proceedings Second International Workshop on Computational Models for Cell Processes, 2009

2008

Centrality, Network Capacity, and Modularity as Parameters to Analyze the Core-Periphery Structure in Metabolic Networks.

Marcio Rosa da Silva, Hongwu Ma, An-Ping Zeng

Proc. IEEE, 2008

2007

Arsenic biosenseor: a step further.

Chris French, Judith Nicholson, Farid Bizzari, Jelena Aleksic, Yizhi Cai, Sreemati Seshasayee, Sergii Ivakhno, Bryony Davidson, Jen Wilson, Kim de Mora, Hongwu Ma, Laszlo Kozma-Bognar, Alistair Elfick

BMC Syst. Biol., 2007

Modeling the arsenic biosensor system.

Yizhi Cai, Bryony Davidson, Hongwu Ma, Chris French

BMC Syst. Biol., 2007

Metabolic network properties help assign weights to elementary modes to understand physiological flux distributions.

Qingzhao Wang, Yudi Yang, Hongwu Ma, Xue-Ming Zhao

Bioinform., 2007

2006

SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms.

Tim Van den Bulcke, Koen Van Leemput, Bart Naudts, Piet van Remortel, Hongwu Ma, Alain Verschoren, Bart De Moor, Kathleen Marchal

BMC Bioinform., 2006

2004

Hierarchical structure and modules in the <i>Escherichia coli </i>transcriptional regulatory network revealed by a new top-down approach.

Hongwu Ma, Jan Buer, An-Ping Zeng

BMC Bioinform., 2004

Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph.

Hongwu Ma, Xue-Ming Zhao, Ying-Jin Yuan, An-Ping Zeng

Bioinform., 2004

2003

The Connectivity Structure, Giant Strong Component and Centrality of Metabolic Networks.

Hongwu Ma, An-Ping Zeng

Bioinform., 2003

Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms.

Hongwu Ma, An-Ping Zeng

Bioinform., 2003

2001

Pathway Analysis of Bacillus subtillis Metabolic Network Based on Genomic Information.

Hongwu Ma, Xiaofeng Guo, Xue-Ming Zhao

Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001