Huaiqiu Zhu

According to our database, Huaiqiu Zhu authored at least 29 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Computer Simulation of Gene Knockout in Bacteria Accelerated by AI.

Peter X. Geng, Jiaheng Hou, Huaiqiu Zhu

Proceedings of the 16th International Congress on Image and Signal Processing, 2023

2022

HoPhage: an ab initio tool for identifying hosts of phage fragments from metaviromes.

Jie Tan, Zhencheng Fang, Shufang Wu, Qian Guo, Xiaoqing Jiang, Huaiqiu Zhu

Bioinform., 2022

2021

LncADeep performance on full-length transcripts.

Cheng Yang, Man Zhou, Haoling Xie, Huaiqiu Zhu

Nat. Mach. Intell., 2021

LightCUD: a program for diagnosing IBD based on human gut microbiome data.

Congmin Xu, Man Zhou, Zhongjie Xie, Mo Li, Xi Zhu, Huaiqiu Zhu

BioData Min., 2021

2020

PlasGUN: gene prediction in plasmid metagenomic short reads using deep learning.

Zhencheng Fang, Jie Tan, Shufang Wu, Mo Li, Chunhui Wang, Yongchu Liu, Huaiqiu Zhu

Bioinform., 2020

An Error Correction Method of Nanopore Sequencing Data Using Deep Learning.

Luotong Wang, Li Qu, Longshu Yang, Yiying Wang, Huaiqiu Zhu

Proceedings of the 13th International Congress on Image and Signal Processing, 2020

2019

How Microbes Shape Their Communities? A Microbial Community Model Based on Functional Genes.

Xiaoqing Jiang, Xin Li, Longshu Yang, Chunhong Liu, Qi Wang, Weilai Chi, Huaiqiu Zhu

Genom. Proteom. Bioinform., 2019

2018

LncADeep: an ab initio lncRNA identification and functional annotation tool based on deep learning.

Cheng Yang, Longshu Yang, Man Zhou, Haoling Xie, Chengjiu Zhang, May D. Wang, Huaiqiu Zhu

Bioinform., 2018

Micro-Inversions In Human Cancer Genomes.

Li Qu, Huaiqiu Zhu, May D. Wang

Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018

A Novel Compression Algorithm for High-Throughput DNA Sequence Based on Huffman Coding Method.

Chuan He, Huaiqiu Zhu

Proceedings of the 11th International Congress on Image and Signal Processing, 2018

2017

MetaComp: comprehensive analysis software for comparative meta-omics including comparative metagenomics.

Peng Zhai, Longshu Yang, Xiao Guo, Zhe Wang, Jiangtao Guo, Xiaoqi Wang, Huaiqiu Zhu

BMC Bioinform., 2017

2016

Identifying micro-inversions using high-throughput sequencing reads.

Feifei He, Yang Li, Yu-Hang Tang, Jian Ma, Huaiqiu Zhu

BMC Genom., 2016

Examining the neural correlates of depressive and motor symptoms in Parkinson's disease using Frequency Component Analysis (FCA).

Xiaopeng Song, Xiao Hu, Shuqin Zhou, Weiguo Liu, Yijun Liu, Huaiqiu Zhu, Jia-Hong Gao

Proceedings of the Medical Imaging 2016: Biomedical Applications in Molecular, Structural, and Functional Imaging, San Diego, California, United States, 27 February, 2016

2015

InteMAP: Integrated metagenomic assembly pipeline for NGS short reads.

Binbin Lai, Fumeng Wang, Xiaoqi Wang, Liping Duan, Huaiqiu Zhu

BMC Bioinform., 2015

2013

Gene prediction in metagenomic fragments based on the SVM algorithm.

Yongchu Liu, Jiangtao Guo, Gang-Qing Hu, Huaiqiu Zhu

BMC Bioinform., 2013

2012

A <i>de novo</i> metagenomic assembly program for shotgun DNA reads.

Binbin Lai, Ruogu Ding, Yang Li, Liping Duan, Huaiqiu Zhu

Bioinform., 2012

2011

A mutation degree model for the identification of transcriptional regulatory elements.

Changqing Zhang, Jin Wang, Xu Hua, Jinggui Fang, Huaiqiu Zhu, Xiang Gao

BMC Bioinform., 2011

Gene prediction in metagenomic fragments based on the SVM algorithm.

Yongchu Liu, Jiangtao Guo, Huaiqiu Zhu

Proceedings of the 4th International Conference on Biomedical Engineering and Informatics, 2011

A de novo assembly method for metagenomic DNA reads with mate pairs.

Binbin Lai, Ruogu Ding, Huaiqiu Zhu

Proceedings of the 4th International Conference on Biomedical Engineering and Informatics, 2011

2009

Prediction of translation initiation site for microbial genomes with TriTISA.

Gang-Qing Hu, Xiaobin Zheng, Huaiqiu Zhu, Zhen-Su She

Bioinform., 2009

MetaTISA: Metagenomic Translation Initiation Site Annotator for improving gene start prediction.

Gang-Qing Hu, Jiangtao Guo, Yongchu Liu, Huaiqiu Zhu

Bioinform., 2009

2008

ProTISA: a comprehensive resource for translation initiation site annotation in prokaryotic genomes.

Gang-Qing Hu, Xiaobin Zheng, Yi-Fan Yang, Philippe Ortet, Zhen-Su She, Huaiqiu Zhu

Nucleic Acids Res., 2008

A dynamic Bayesian network approach to protein secondary structure prediction.

Xin-Qiu Yao, Huaiqiu Zhu, Zhen-Su She

BMC Bioinform., 2008

Computational evaluation of TIS annotation for prokaryotic genomes.

Gang-Qing Hu, Xiaobin Zheng, Lining Ju, Huaiqiu Zhu, Zhen-Su She

BMC Bioinform., 2008

2007

MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes.

Huaiqiu Zhu, Gang-Qing Hu, Yi-Fan Yang, Jin Wang, Zhen-Su She

BMC Bioinform., 2007

Tree and rate estimation by local evaluation of heterochronous nucleotide data.

Zhu Yang, John D. O'Brien, Xiaobin Zheng, Huaiqiu Zhu, Zhen-Su She

Bioinform., 2007

2004

Multivariate Entropy Distance Method for Prokaryotic Gene Identification.

Zheng-Qing Ouyang, Huaiqiu Zhu, Jin Wang, Zhen-Su She

J. Bioinform. Comput. Biol., 2004

Accuracy improvement for identifying translation initiation sites in microbial genomes.

Huaiqiu Zhu, Gang-Qing Hu, Zheng-Qing Ouyang, Jin Wang, Zhen-Su She

Bioinform., 2004

Enrichment of transcriptional regulatory sites in non-coding genomic region.

Wen Xue, Jin Wang, Zhirong Shen, Huaiqiu Zhu

Bioinform., 2004