Ian T. Paulsen

According to our database, Ian T. Paulsen authored at least 16 papers between 2000 and 2017.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2017

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.

Ingrid M. Keseler, Amanda Mackie, Alberto Santos-Zavaleta, Richard Billington, César Bonavides-Martínez, Ron Caspi, Carol A. Fulcher, Socorro Gama-Castro, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Luis Muñiz-Rascado, Quang Ong, Suzanne M. Paley, Martín Peralta-Gil, Pallavi Subhraveti, David A. Velázquez-Ramírez, Daniel S. Weaver, Julio Collado-Vides, Ian T. Paulsen, Peter D. Karp

Nucleic Acids Res., 2017

TransportDB 2.0: a database for exploring membrane transporters in sequenced genomes from all domains of life.

Liam D. H. Elbourne, Sasha G. Tetu, Karl A. Hassan, Ian T. Paulsen

Nucleic Acids Res., 2017

2014

A genome-scale metabolic flux model of Escherichia coli K-12 derived from the EcoCyc database.

Daniel S. Weaver, Ingrid M. Keseler, Amanda Mackie, Ian T. Paulsen, Peter D. Karp

BMC Syst. Biol., 2014

2013

EcoCyc: fusing model organism databases with systems biology.

Ingrid M. Keseler, Amanda Mackie, Martín Peralta-Gil, Alberto Santos-Zavaleta, Socorro Gama-Castro, César Bonavides-Martínez, Carol A. Fulcher, Araceli M. Huerta, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Luis Muñiz-Rascado, Quang Ong, Suzanne M. Paley, Imke Schröder, Alexander Glennon Shearer, Pallavi Subhraveti, Michael Travers, Deepika Weerasinghe, Verena Weiss, Julio Collado-Vides, Robert P. Gunsalus, Ian T. Paulsen, Peter D. Karp

Nucleic Acids Res., 2013

2011

EcoCyc: a comprehensive database of <i>Escherichia coli</i> biology.

Ingrid M. Keseler, Julio Collado-Vides, Alberto Santos-Zavaleta, Martín Peralta-Gil, Socorro Gama-Castro, Luis Muñiz-Rascado, César Bonavides-Martínez, Suzanne M. Paley, Markus Krummenacker, Tomer Altman, Pallavi Kaipa, Aaron Spaulding, John Pacheco, Mario Latendresse, Carol A. Fulcher, Malabika Sarker, Alexander Glennon Shearer, Amanda Mackie, Ian T. Paulsen, Robert P. Gunsalus, Peter D. Karp

Nucleic Acids Res., 2011

2010

Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology.

Peter D. Karp, Suzanne M. Paley, Markus Krummenacker, Mario Latendresse, Joseph M. Dale, Thomas J. Lee, Pallavi Kaipa, Fred Gilham, Aaron Spaulding, Liviu Popescu, Tomer Altman, Ian T. Paulsen, Ingrid M. Keseler, Ron Caspi

Briefings Bioinform., 2010

2009

EcoCyc: A comprehensive view of <i>Escherichia coli</i> biology.

Ingrid M. Keseler, César Bonavides-Martínez, Julio Collado-Vides, Socorro Gama-Castro, Robert P. Gunsalus, D. Aaron Johnson, Markus Krummenacker, Laura M. Nolan, Suzanne M. Paley, Ian T. Paulsen, Martín Peralta-Gil, Alberto D. Santos-Zavaleta, Alexander Glennon Shearer, Peter D. Karp

Nucleic Acids Res., 2009

2008

Annotation-based inference of transporter function.

Thomas J. Lee, Ian T. Paulsen, Peter D. Karp

Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

2007

TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels.

Qinghu Ren, Kaixi Chen, Ian T. Paulsen

Nucleic Acids Res., 2007

2005

Comparative Analyses of Fundamental Differences in Membrane Transport Capabilities in Prokaryotes and Eukaryotes.

Qinghu Ren, Ian T. Paulsen

PLoS Comput. Biol., 2005

EcoCyc: a comprehensive database resource for <i>Escherichia coli</i>.

Ingrid M. Keseler, Julio Collado-Vides, Socorro Gama-Castro, John Ingraham, Suzanne M. Paley, Ian T. Paulsen, Martín Peralta-Gil, Peter D. Karp

Nucleic Acids Res., 2005

2004

TransportDB: a relational database of cellular membrane transport systems.

Qinghu Ren, Katherine H. Kang, Ian T. Paulsen

Nucleic Acids Res., 2004

2003

ToxoDB: accessing the Toxoplasma gondii genome.

Jessica C. Kissinger, Bindu Gajria, Li Li, Ian T. Paulsen, David S. Roos

Nucleic Acids Res., 2003

2002

The EcoCyc Database.

Peter D. Karp, Monica Riley, Milton H. Saier Jr., Ian T. Paulsen, Julio Collado-Vides, Suzanne M. Paley, Alida Pellegrini-Toole, César Bonavides-Martínez, Socorro Gama-Castro

Nucleic Acids Res., 2002

2001

TIGRFAMs: a protein family resource for the functional identification of proteins.

Daniel H. Haft, Brendan J. Loftus, Delwood L. Richardson, Fan Yang, Jonathan A. Eisen, Ian T. Paulsen, Owen White

Nucleic Acids Res., 2001

2000

The EcoCyc and MetaCyc databases.

Peter D. Karp, Monica Riley, Milton H. Saier Jr., Ian T. Paulsen, Suzanne M. Paley, Alida Pellegrini-Toole

Nucleic Acids Res., 2000