John Ingraham

According to our database, John Ingraham authored at least 7 papers between 2005 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2019

The EVcouplings Python framework for coevolutionary sequence analysis.

Thomas A. Hopf, Anna G. Green, Benjamin Schubert, Sophia Mersmann, Charlotta Schärfe, John Ingraham, Ágnes Tóth-Petróczy, Kelly Brock, Adam J. Riesselman, Perry Palmedo, Chan Kang, Robert P. Sheridan, Eli J. Draizen, Christian Dallago, Chris Sander, Debora S. Marks

Bioinform., 2019

Generative Models for Graph-Based Protein Design.

John Ingraham, Vikas K. Garg, Regina Barzilay, Tommi S. Jaakkola

Proceedings of the Advances in Neural Information Processing Systems 32: Annual Conference on Neural Information Processing Systems 2019, 2019

Learning Protein Structure with a Differentiable Simulator.

John Ingraham, Adam J. Riesselman, Chris Sander, Debora S. Marks

Proceedings of the 7th International Conference on Learning Representations, 2019

2017

Variational Inference for Sparse and Undirected Models.

John Ingraham, Debora S. Marks

Proceedings of the 34th International Conference on Machine Learning, 2017

2012

CTArcade: learning computational thinking while training virtual characters through game play.

Tak Yeon Lee, Matthew Louis Mauriello, John Ingraham, Awalin Sopan, June Ahn, Benjamin B. Bederson

Proceedings of the CHI Conference on Human Factors in Computing Systems, 2012

2006

MetaCyc: a multiorganism database of metabolic pathways and enzymes.

Ron Caspi, Hartmut Foerster, Carol A. Fulcher, Rebecca Hopkinson, John Ingraham, Pallavi Kaipa, Markus Krummenacker, Suzanne M. Paley, John Pick, Seung Yon Rhee, Christophe Tissier, Peifen Zhang, Peter D. Karp

Nucleic Acids Res., 2006

2005

EcoCyc: a comprehensive database resource for <i>Escherichia coli</i>.

Ingrid M. Keseler, Julio Collado-Vides, Socorro Gama-Castro, John Ingraham, Suzanne M. Paley, Ian T. Paulsen, Martín Peralta-Gil, Peter D. Karp

Nucleic Acids Res., 2005