Peter D. Karp
Orcid: 0000-0002-5876-6418
According to our database1,
Peter D. Karp
authored at least 103 papers
between 1989 and 2022.
Collaborative distances:
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On csauthors.net:
Bibliography
2022
Frontiers Bioinform., 2022
Reviewing knowledgebase and database grant proposals in the life sciences: the role of innovation.
Database J. Biol. Databases Curation, 2022
A roadmap for the functional annotation of protein families: a community perspective.
Database J. Biol. Databases Curation, 2022
2021
Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology.
Briefings Bioinform., 2021
2020
Nucleic Acids Res., 2020
Taxonomic weighting improves the accuracy of a gap-filling algorithm for metabolic models.
Bioinform., 2020
2019
The MultiOmics Explainer: explaining omics results in the context of a pathway/genome database.
BMC Bioinform., 2019
Briefings Bioinform., 2019
2018
2017
Nucleic Acids Res., 2017
Database J. Biol. Databases Curation, 2017
How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications.
Briefings Bioinform., 2017
2016
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Nucleic Acids Res., 2016
Representation and inference of cellular architecture for metabolic reconstruction and modeling.
Bioinform., 2016
Database J. Biol. Databases Curation, 2016
Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology.
Briefings Bioinform., 2016
2015
ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus.
PLoS Comput. Biol., 2015
Message from the ISCB: ISCB Ebola award for important future research on the computational biology of Ebola virus.
Bioinform., 2015
2014
PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.
Nucleic Acids Res., 2014
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
Nucleic Acids Res., 2014
A genome-scale metabolic flux model of Escherichia coli K-12 derived from the EcoCyc database.
BMC Syst. Biol., 2014
Database J. Biol. Databases Curation, 2014
2013
Nucleic Acids Res., 2013
Computing minimal nutrient sets from metabolic networks via linear constraint solving.
BMC Bioinform., 2013
BMC Bioinform., 2013
Database J. Biol. Databases Curation, 2013
2012
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Nucleic Acids Res., 2012
J. Chem. Inf. Model., 2012
Bioinform., 2012
2011
Nucleic Acids Res., 2011
BMC Bioinform., 2011
Using cellular network diagrams to interpret large-scale datasets: past progress and future challenges.
Proceedings of the Human Vision and Electronic Imaging XVI, 2011
2010
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Nucleic Acids Res., 2010
A systematic study of genome context methods: calibration, normalization and combination.
BMC Bioinform., 2010
Database J. Biol. Databases Curation, 2010
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology.
Briefings Bioinform., 2010
Development of Large Scientific Knowledge Bases.
Proceedings of the ICAART 2010 - Proceedings of the International Conference on Agents and Artificial Intelligence, Volume 1, 2010
Databases and Algorithms for Pathway Bioinformatics.
Proceedings of the HEALTHINF 2010, 2010
2009
Nucleic Acids Res., 2009
2008
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
Nucleic Acids Res., 2008
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008
Proceedings of the Data Integration in the Life Sciences, 5th International Workshop, 2008
2007
Using genome-context data to identify specific types of functional associations in pathway/genome databases.
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007
2006
Nucleic Acids Res., 2006
BMC Bioinform., 2006
2005
Nucleic Acids Res., 2005
2004
Nucleic Acids Res., 2004
A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases.
BMC Bioinform., 2004
Using functional and organizational information to improve genome-wide computational prediction of transcription units on pathway-genome databases.
Bioinform., 2004
Proceedings of the Biocomputing 2004, 2004
2003
What Database Management System(s) Should Be Employed in Bioinformatics Applications?
OMICS, 2003
Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO).
Bioinform., 2003
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003
2002
Bioinform., 2002
The Pathway Tools software.
Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002
2001
Proceedings of the 6th Pacific Symposium on Biocomputing, 2001
Proceedings of the 6th Pacific Symposium on Biocomputing, 2001
2000
Bioinform., 2000
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000
1999
Nucleic Acids Res., 1999
J. Intell. Inf. Syst., 1999
1998
Nucleic Acids Res., 1998
Proceedings of the Fifteenth National Conference on Artificial Intelligence and Tenth Innovative Applications of Artificial Intelligence Conference, 1998
1997
Nucleic Acids Res., 1997
Comput. Appl. Biosci., 1997
Proceedings of the Intelligent Access to Heterogeneous Information, 1997
Prediction of Enzyme Classification from Protein Sequence without the Use of Sequence Similarity.
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997
Proceedings of the Fourteenth National Conference on Artificial Intelligence and Ninth Innovative Applications of Artificial Intelligence Conference, 1997
1996
Nucleic Acids Res., 1996
HinCyc: A Knowledge Base of the Complete Genome and Metabolic Pathways of H. influenzae.
Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996
Three Models of Gene Regulation in E.coli.
Proceedings of the German Conference on Bioinformatics, 1996
1995
Proceedings of the Fourteenth International Joint Conference on Artificial Intelligence, 1995
Proceedings of the Fourteenth International Joint Conference on Artificial Intelligence, 1995
1994
The Grasper-CL Graph Management System.
LISP Symb. Comput., 1994
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, 1994
Proceedings of the Third International Conference on Information and Knowledge Management (CIKM'94), Gaithersburg, Maryland, USA, November 29, 1994
1993
Design Methods for Scientific Hypothesis Formation and Their Application to Molecular Biology.
Mach. Learn., 1993
Detection and elimination of inference channels in multilevel relational database systems.
Proceedings of the 1993 IEEE Computer Society Symposium on Research in Security and Privacy, 1993
Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology, 1993
1992
Comput. Appl. Biosci., 1992
1991
Comput. Appl. Biosci., 1991
1990
1989
PhD thesis, 1989