Idoia Ochoa

According to our database1, Idoia Ochoa authored at least 29 papers between 2010 and 2020.

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Bibliography

2020
VEF: a variant filtering tool based on ensemble methods.
Bioinform., 2020

GABAC: an arithmetic coding solution for genomic data.
Bioinform., 2020

ENANO: Encoder for NANOpore FASTQ files.
Bioinform., 2020

DZip: Improved General-Purpose Lossless Compression Based on Novel Neural Network Modeling.
Proceedings of the Data Compression Conference, 2020

2019
MassComp, a lossless compressor for mass spectrometry data.
BMC Bioinform., 2019

SPRING: a next-generation compressor for FASTQ data.
Bioinform., 2019

Compression of Nanopore FASTQ Files.
Proceedings of the Bioinformatics and Biomedical Engineering, 2019

AliCo: A New Efficient Representation for SAM Files.
Proceedings of the Data Compression Conference, 2019

DeepZip: Lossless Data Compression Using Recurrent Neural Networks.
Proceedings of the Data Compression Conference, 2019

2018
FaStore: a space-saving solution for raw sequencing data.
Bioinform., 2018

METHCOMP: a special purpose compression platform for DNA methylation data.
Bioinform., 2018

2017
Effect of lossy compression of quality scores on variant calling.
Briefings Bioinform., 2017

GeneComp, a New Reference-Based Compressor for SAM Files.
Proceedings of the 2017 Data Compression Conference, 2017

2016
GTRAC: fast retrieval from compressed collections of genomic variants.
Bioinform., 2016

Comment on: 'ERGC: an efficient referential genome compression algorithm'.
Bioinform., 2016

CROMqs: an infinitesimal successive refinement lossy compressor for the quality scores.
Proceedings of the 2016 IEEE Information Theory Workshop, 2016

Denoising of Quality Scores for Boosted Inference and Reduced Storage.
Proceedings of the 2016 Data Compression Conference, 2016

A Cluster-Based Approach to Compression of Quality Scores.
Proceedings of the 2016 Data Compression Conference, 2016

2015
iDoComp: a compression scheme for assembled genomes.
Bioinform., 2015

QVZ: lossy compression of quality values.
Bioinform., 2015

2014
Aligned genomic data compression via improved modeling.
J. Bioinform. Comput. Biol., 2014

Compression Schemes for Similarity Queries.
Proceedings of the Data Compression Conference, 2014

2013
QualComp: a new lossy compressor for quality scores based on rate distortion theory.
BMC Bioinform., 2013

Efficient similarity queries via lossy compression.
Proceedings of the 51st Annual Allerton Conference on Communication, 2013

2012
Lossy Compression of Quality Values via Rate Distortion Theory
CoRR, 2012

Reference based genome compression.
Proceedings of the 2012 IEEE Information Theory Workshop, 2012

2010
Turbo joint source-channel coding of non-uniform memoryless sources in the bandwidth-limited regime.
IEEE Commun. Lett., 2010

LDPC Codes for Non-Uniform Memoryless Sources and Unequal Energy Allocation.
IEEE Commun. Lett., 2010

Joint Turbo Coding and Source-Controlled Modulation of Cycle-Stationary Sources in the Bandwidth-Limited Regime.
Proceedings of the Mobile Lightweight Wireless Systems, 2010


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