Jan Fostier

According to our database1, Jan Fostier authored at least 21 papers between 2007 and 2020.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Bibliography

2020
Accurate determination of node and arc multiplicities in de bruijn graphs using conditional random fields.
BMC Bioinform., 2020

GABAC: an arithmetic coding solution for genomic data.
Bioinform., 2020

2019
Illumina error correction near highly repetitive DNA regions improves de novo genome assembly.
BMC Bioinform., 2019

2018
Dynamical anchoring of distant arrhythmia sources by fibrotic regions via restructuring of the activation pattern.
PLoS Comput. Biol., 2018

BrownieAligner: accurate alignment of Illumina sequencing data to de Bruijn graphs.
BMC Bioinform., 2018

A BLAS-Based Algorithm for Finding Position Weight Matrix Occurrences in DNA Sequences on CPUs and GPUs.
Proceedings of the Bioinformatics and Biomedical Engineering, 2018

2017
Evaluation of the impact of Illumina error correction tools on de novo genome assembly.
BMC Bioinform., 2017

OMSim: a simulator for optical map data.
Bioinform., 2017

2016
Jabba: hybrid error correction for long sequencing reads.
Algorithms Mol. Biol., 2016

2015
BLSSpeller: exhaustive comparative discovery of conserved <i>cis</i>-regulatory elements.
Bioinform., 2015

Halvade: scalable sequence analysis with MapReduce.
Bioinform., 2015

Jabba: Hybrid Error Correction for Long Sequencing Reads Using Maximal Exact Matches.
Proceedings of the Algorithms in Bioinformatics - 15th International Workshop, 2015

Performance Analysis of a Parallel, Multi-node Pipeline for DNA Sequencing.
Proceedings of the Parallel Processing and Applied Mathematics, 2015

Towards Parallel Large-Scale Genomic Prediction by Coupling Sparse and Dense Matrix Algebra.
Proceedings of the 23rd Euromicro International Conference on Parallel, 2015

2014
In-memory, distributed content-based recommender system.
J. Intell. Inf. Syst., 2014

2013
EPSILON: an eQTL prioritization framework using similarity measures derived from local networks.
Bioinform., 2013

A Parallel, Distributed-Memory Framework for Comparative Motif Discovery.
Proceedings of the Parallel Processing and Applied Mathematics, 2013

2012
Online execution time prediction for computationally intensive applications with periodic progress updates.
J. Supercomput., 2012

<i>O</i>(1) Computation of Legendre Polynomials and Gauss-Legendre Nodes and Weights for Parallel Computing.
SIAM J. Sci. Comput., 2012

2011
A greedy, graph-based algorithm for the alignment of multiple homologous gene lists.
Bioinform., 2011

2007
A GRID Computer Implementation of the Multilevel Fast Multipole Algorithm for Full-Wave Analysis of Optical Devices.
IEICE Trans. Commun., 2007


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