Ioannis P. Androulakis

According to our database1, Ioannis P. Androulakis authored at least 40 papers between 1995 and 2019.

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Bibliography

2019
The Impact of Stochasticity and Its Control on a Model of the Inflammatory Response.
Comput., 2019

The quest for digital health: From diseases to patients.
Comput. Chem. Eng., 2019

2017
On the analysis of complex biological supply chains: From process systems engineering to quantitative systems pharmacology.
Comput. Chem. Eng., 2017

2014
Biosystems modeling and engineering.
Comput. Chem. Eng., 2014

A chemical engineer's perspective on health and disease.
Comput. Chem. Eng., 2014

Bioinformatics analysis of transcriptional regulation of circadian genes in rat liver.
BMC Bioinform., 2014

2013
A multiscale modeling approach to inflammation: A case study in human endotoxemia.
J. Comput. Phys., 2013

2011
Pulsatile Glucocorticoid Secretion: Origins and Downstream Effects.
IEEE Trans. Biomed. Eng., 2011

Model building using bi-level optimization.
J. Glob. Optim., 2011

2010
Circadian signatures in rat liver: from gene expression to pathways.
BMC Bioinform., 2010

Comparative analysis of acute and chronic corticosteroid pharmacogenomic effects in rat liver: Transcriptional dynamics and regulatory structures.
BMC Bioinform., 2010

Importance of replication in analyzing time-series gene expression data: Corticosteroid dynamics and circadian patterns in rat liver.
BMC Bioinform., 2010

Modeling Circadian Rhythms in Inflammation.
Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

Dynamic Complexity of the Temporal Transcriptional Regulation Program in Human Endotoxemia.
Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

Effects of Triadimefon on the Metabolism of Cultured Hepatocytes.
Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

2009
Quadratic Integer Programming: Complexity and Equivalent Forms.
Proceedings of the Encyclopedia of Optimization, Second Edition, 2009

Selection of Maximally Informative Genes.
Proceedings of the Encyclopedia of Optimization, Second Edition, 2009

Mathematical Programming for Data Mining.
Proceedings of the Encyclopedia of Optimization, Second Edition, 2009

MINLP: Branch and Bound Global Optimization Algorithm.
Proceedings of the Encyclopedia of Optimization, Second Edition, 2009

Dynamic Programming: Undiscounted Problems.
Proceedings of the Encyclopedia of Optimization, Second Edition, 2009

Dynamic Programming: Stochastic Shortest Path Problems.
Proceedings of the Encyclopedia of Optimization, Second Edition, 2009

Dynamic Programming: Inventory Control.
Proceedings of the Encyclopedia of Optimization, Second Edition, 2009

Dynamic Programming: Infinite Horizon Problems, Overview.
Proceedings of the Encyclopedia of Optimization, Second Edition, 2009

Dynamic Programming: Discounted Problems.
Proceedings of the Encyclopedia of Optimization, Second Edition, 2009

Dynamic Programming: Average Cost Per Stage Problems.
Proceedings of the Encyclopedia of Optimization, Second Edition, 2009

Asynchronous Distributed Optimization Algorithms.
Proceedings of the Encyclopedia of Optimization, Second Edition, 2009

A mixed-integer optimization framework for the synthesis and analysis of regulatory networks.
J. Glob. Optim., 2009

Networks, biology and systems engineering: A case study in inflammation.
Comput. Chem. Eng., 2009

Assessing and selecting gene expression signals based upon the quality of the measured dynamics.
BMC Bioinform., 2009

Recent Advances in the Computational Discovery of Transcription Factor Binding Sites.
Algorithms, 2009

2008
Informative gene selection and design of regulatory networks using integer optimization.
Comput. Chem. Eng., 2008

A novel MINLP-based representation of the original complex model for predicting gasoline emissions.
Comput. Chem. Eng., 2008

2007
Bioinformatics analysis of the early inflammatory response in a rat thermal injury model.
BMC Bioinform., 2007

A novel non-overlapping bi-clustering algorithm for network generation using living cell array data.
Bioinform., 2007

2006
New approaches for representing, analyzing and visualizing complex kinetic transformations.
Comput. Chem. Eng., 2006

2005
Selecting maximally informative genes.
Comput. Chem. Eng., 2005

2004
"Store and retrieve" representations of dynamic systems motivated by studies in gas phase chemical kinetics.
Comput. Chem. Eng., 2004

1997
Prediction of Oligopeptide Conformations via Deterministic Global Optimization.
J. Glob. Optim., 1997

1995
αBB: A global optimization method for general constrained nonconvex problems.
J. Glob. Optim., 1995

A deterministic global optimization approach for the protein folding problem.
Proceedings of the Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding, 1995


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