James J. Chen

According to our database, James J. Chen authored at least 29 papers between 2004 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

Discovering Drug-Drug Associations in the FDA Adverse Event Reporting System Database with Data Mining Approaches.

Weizhong Zhao, Huyen Le, James J. Chen, Hesha J. Duggirala, Richard Forshee, Taxiarchis Botsis, Henry Francis, Huixiao Hong, Weida Tong, Yi-Ting Hwang, Wen Zou

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2017

Best Setting of Model Parameters in Applying Topic Modeling on Textual Documents.

Wen Zou, Weizhong Zhao, James J. Chen, Roger Perkins

Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016

Use of data mining at the Food and Drug Administration.

Hesha J. Duggirala, Joseph M. Tonning, Ella Smith, Roselie A. Bright, John D. Baker, Robert Ball, Carlos Bell, Susan J. Bright-Ponte, Taxiarchis Botsis, Khaled Bouri, Marc Boyer, Keith Burkhart, G. Steven Condrey, James J. Chen, Stuart Chirtel, Ross W. Filice, Henry Francis, Hongying Jiang, Jonathan Levine, David Martin, Taiye Oladipo, Rene O'Neill, Lee Anne M. Palmer, Antonio Paredes, George Rochester, Deborah Sholtes, Ana Szarfman, Hui-Lee Wong, Zhiheng Xu, Taha A. Kass-Hout

J. Am. Medical Informatics Assoc., 2016

Erratum to: A novel procedure on next generation sequencing data analysis using text mining algorithm.

Weizhong Zhao, James J. Chen, Roger Perkins, Yuping Wang, Zhichao Liu, Huixiao Hong, Weida Tong, Wen Zou

BMC Bioinform., 2016

A novel procedure on next generation sequencing data analysis using text mining algorithm.

Weizhong Zhao, James J. Chen, Roger Perkins, Yuping Wang, Zhichao Liu, Huixiao Hong, Weida Tong, Wen Zou

BMC Bioinform., 2016

2015

A heuristic approach to determine an appropriate number of topics in topic modeling.

Weizhong Zhao, James J. Chen, Roger Perkins, Zhichao Liu, Weigong Ge, Yijun Ding, Wen Zou

BMC Bioinform., December, 2015

2014

Topic modeling for cluster analysis of large biological and medical datasets.

Weizhong Zhao, Wen Zou, James J. Chen

BMC Bioinform., 2014

2013

Data mining tools for Salmonella characterization: application to gel-based fingerprinting analysis.

Wen Zou, Hailin Tang, Weizhong Zhao, Joe Meehan, Steven L. Foley, Wei-Jiun Lin, Hung-Chia Chen, Hong Fang, Rajesh Nayak, James J. Chen

BMC Bioinform., 2013

Identification of reproducible gene expression signatures in lung adenocarcinoma.

Tzu-Pin Lu, Eric Y. Chuang, James J. Chen

BMC Bioinform., 2013

Class-imbalanced classifiers for high-dimensional data.

Wei-Jiun Lin, James J. Chen

Briefings Bioinform., 2013

2010

Power and sample size estimation in microarray studies.

Wei-Jiun Lin, Huey-miin Hsueh, James J. Chen

BMC Bioinform., 2010

An FDA bioinformatics tool for microbial genomics research on molecular characterization of bacterial foodborne pathogens using microarrays.

Hong Fang, Joshua Xu, Don Ding, Scott A. Jackson, Isha R. Patel, Jonathan G. Frye, Wen Zou, Rajesh Nayak, Steven L. Foley, James J. Chen, Zhenqiang Su, Yanbin Ye, Steve Turner, Steve Harris, Guangxu Zhou, Carl Cerniglia, Weida Tong

BMC Bioinform., 2010

2009

Multivariate analysis of variance test for gene set analysis.

Chen-An Tsai, James J. Chen

Bioinform., 2009

Development of biomarker classifiers from high-dimensional data.

Songjoon Baek, Chen-An Tsai, James J. Chen

Briefings Bioinform., 2009

A model-free ensemble method for class prediction with application to biomedical decision making.

Ralph L. Kodell, Bruce A. Pearce, Songjoon Baek, Hojin Moon, Hongshik Ahn, John F. Young, James J. Chen

Artif. Intell. Medicine, 2009

2008

Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples.

Huixiao Hong, Zhenqiang Su, Weigong Ge, Leming M. Shi, Roger Perkins, Hong Fang, Joshua Xu, James J. Chen, Tao Han, Jim Kaput, James C. Fuscoe, Weida Tong

BMC Bioinform., 2008

2007

Kernel estimation for adjusted p.

Chen-An Tsai, James J. Chen

Comput. Stat. Data Anal., 2007

Classification by ensembles from random partitions of high-dimensional data.

Hongshik Ahn, Hojin Moon, Melissa J. Fazzari, Noha Lim, James J. Chen, Ralph L. Kodell

Comput. Stat. Data Anal., 2007

Gene selection with multiple ordering criteria.

James J. Chen, Chen-An Tsai, ShengLi Tzeng, Chun-Houh Chen

BMC Bioinform., 2007

Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data.

James J. Chen, Huey-miin Hsueh, Robert R. Delongchamp, Chien-Ju Lin, Chen-An Tsai

BMC Bioinform., 2007

Significance analysis of groups of genes in expression profiling studies.

James J. Chen, Taewon Lee, Robert R. Delongchamp, Tao Chen, Chen-An Tsai

Bioinform., 2007

Ensemble methods for classification of patients for personalized medicine with high-dimensional data.

Hojin Moon, Hongshik Ahn, Ralph L. Kodell, Songjoon Baek, Chien-Ju Lin, James J. Chen

Artif. Intell. Medicine, 2007

2005

Regression trees for analysis of count data with extra Poisson variation.

Yunhee Choi, Hongshik Ahn, James J. Chen

Comput. Stat. Data Anal., 2005

Microarray scanner calibration curves: characteristics and implications.

Leming M. Shi, Weida Tong, Zhenqiang Su, Tao Han, Jing Han, Raj K. Puri, Hong Fang, Felix W. Frueh, Federico M. Goodsaid, Lei Guo, William S. Branham, James J. Chen, Z. Alex Xu, Stephen C. Harris, Huixiao Hong, Qian Xie, Roger Perkins, James C. Fuscoe

BMC Bioinform., 2005

Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential.

Leming M. Shi, Weida Tong, Hong Fang, Uwe Scherf, Jing Han, Raj K. Puri, Felix W. Frueh, Federico M. Goodsaid, Lei Guo, Zhenqiang Su, Tao Han, James C. Fuscoe, Z. Alex Xu, Tucker A. Patterson, Huixiao Hong, Qian Xie, Roger Perkins, James J. Chen, Daniel A. Casciano

BMC Bioinform., 2005

Sample size for gene expression microarray experiments.

Chen-An Tsai, Sue-Jane Wang, Dung-Tsa Chen, James J. Chen

Bioinform., 2005

Probe rank approaches for gene selection in oligonucleotide arrays with a small number of replicates.

Dung-Tsa Chen, James J. Chen, Seng-jaw Soong

Bioinform., 2005

2004

Sample Size for Identifying Differentially Expressed Genes in Microarray Experiments.

Sue-Jane Wang, James J. Chen

J. Comput. Biol., 2004

Analysis of variance components in gene expression data.

James J. Chen, Robert R. Delongchamp, Chen-An Tsai, Huey-miin Hsueh, Frank Sistare, Karol L. Thompson, Varsha G. Desai, James C. Fuscoe

Bioinform., 2004