Weida Tong
According to our database1,
Weida Tong
authored at least 70 papers
between 1995 and 2023.
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Bibliography
2023
PLM-ARG: antibiotic resistance gene identification using a pretrained protein language model.
Bioinform., November, 2023
2022
DeepCausality: A general AI-powered causal inference framework for free text: A case study of LiverTox.
Frontiers Artif. Intell., 2022
Corrigendum: DeepCarc: Deep learning-powered carcinogenicity prediction using model-level representation.
Frontiers Artif. Intell., 2022
Adaptability of AI for safety evaluation in regulatory science: A case study of drug-induced liver injury.
Frontiers Artif. Intell., 2022
Accurate species identification of food-contaminating beetles with quality-improved elytral images and deep learning.
Frontiers Artif. Intell., 2022
Best practice and reproducible science are required to advance artificial intelligence in real-world applications.
Briefings Bioinform., 2022
2021
BERT-Based Natural Language Processing of Drug Labeling Documents: A Case Study for Classifying Drug-Induced Liver Injury Risk.
Frontiers Artif. Intell., 2021
InferBERT: A Transformer-Based Causal Inference Framework for Enhancing Pharmacovigilance.
Frontiers Artif. Intell., 2021
DeepCarc: Deep Learning-Powered Carcinogenicity Prediction Using Model-Level Representation.
Frontiers Artif. Intell., 2021
DICE: A Drug Indication Classification and Encyclopedia for AI-Based Indication Extraction.
Frontiers Artif. Intell., 2021
Discovering Drug-Drug Associations in the FDA Adverse Event Reporting System Database with Data Mining Approaches.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
2020
DLI-IT: a deep learning approach to drug label identification through image and text embedding.
BMC Medical Informatics Decis. Mak., 2020
The need for standardisation in life science research - an approach to excellence and trust.
F1000Research, 2020
2019
A deep learning model to recognize food contaminating beetle species based on elytra fragments.
Comput. Electron. Agric., 2019
BMC Bioinform., 2019
Correction to: Similarities and differences between variants called with human reference genome HG19 or HG38.
BMC Bioinform., 2019
Similarities and differences between variants called with human reference genome HG19 or HG38.
BMC Bioinform., 2019
2017
Integrating Drug's Mode of Action into Quantitative Structure-Activity Relationships for Improved Prediction of Drug-Induced Liver Injury.
J. Chem. Inf. Model., 2017
Toward precision breast cancer survival prediction utilizing combined whole genome-wide expression and somatic mutation analysis.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
Comprehensive analysis of pulmonary adenocarcinoma in situ (AIS) revealed new insights into lung cancer progression.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
Protein-Protein Interaction Extraction Using Attention-Based Convolution Neural Networks.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017
2016
Erratum to: A novel procedure on next generation sequencing data analysis using text mining algorithm.
BMC Bioinform., 2016
A novel procedure on next generation sequencing data analysis using text mining algorithm.
BMC Bioinform., 2016
An Image Analysis Environment for Species Identification of Food Contaminating Beetles.
Proceedings of the Thirtieth AAAI Conference on Artificial Intelligence, 2016
2015
Understanding and predicting binding between human leukocyte antigens (HLAs) and peptides by network analysis.
BMC Bioinform., December, 2015
2014
Of text and gene - using text mining methods to uncover hidden knowledge in toxicogenomics.
BMC Syst. Biol., 2014
Whole genome sequencing of 35 individuals provides insights into the genetic architecture of Korean population.
BMC Bioinform., 2014
Mining hidden knowledge for drug safety assessment: topic modeling of LiverTox as a case study.
BMC Bioinform., 2014
BMC Bioinform., 2014
Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms.
BMC Bioinform., 2014
Competitive molecular docking approach for predicting estrogen receptor subtype α agonists and antagonists.
BMC Bioinform., 2014
BMC Bioinform., 2014
2013
Int. J. Bioinform. Res. Appl., 2013
Homology modeling, molecular docking, and molecular dynamics simulations elucidated α-fetoprotein binding modes.
BMC Bioinform., 2013
A systems approach for analysis of high content screening assay data with topic modeling.
BMC Bioinform., 2013
2012
Investigating drug repositioning opportunities in FDA drug labels through topic modeling.
BMC Bioinform., 2012
2011
Translating Clinical Findings into Knowledge in Drug Safety Evaluation - Drug Induced Liver Injury Prediction System (DILIps).
PLoS Comput. Biol., 2011
Constructing a robust protein-protein interaction network by integrating multiple public databases.
BMC Bioinform., 2011
Selecting a single model or combining multiple models for microarray-based classifier development? - A comparative analysis based on large and diverse datasets generated from the MAQC-II project.
BMC Bioinform., 2011
BMC Bioinform., 2011
The MicroArray Quality Control (MAQC) Project and Cross-Platform Analysis of Microarray Data.
Proceedings of the Handbook of Statistical Bioinformatics., 2011
2010
BMC Bioinform., 2010
Evaluation of gene expression data generated from expired Affymetrix GeneChip<sup>®</sup> microarrays using MAQC reference RNA samples.
BMC Bioinform., 2010
An FDA bioinformatics tool for microbial genomics research on molecular characterization of bacterial foodborne pathogens using microarrays.
BMC Bioinform., 2010
BMC Bioinform., 2010
ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level.
Bioinform., 2010
2009
The Accurate Prediction of Protein Family from Amino Acid Sequence by Measuring Features of Sequence Fragments.
J. Comput. Biol., 2009
Accurate Prediction and Recognition of Subfamilies of G Protein-Coupled Receptors from Amino Acid Sequences.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009
2008
Mold<sup>2</sup>, Molecular Descriptors from 2D Structures for Chemoinformatics and Toxicoinformatics.
J. Chem. Inf. Model., 2008
Very Important Pool (VIP) genes - an application for microarray-based molecular signatures.
BMC Bioinform., 2008
Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples.
BMC Bioinform., 2008
2007
Consensus analysis of multiple classifiers using non-repetitive variables: Diagnostic application to microarray gene expression data.
Comput. Biol. Chem., 2007
2006
GOFFA: Gene Ontology For Functional Analysis - A FDA Gene Ontology Tool for Analysis of Genomic and Proteomic Data.
BMC Bioinform., 2006
Microarray analysis distinguishes differential gene expression patterns from large and small colony <i>Thymidine kinase </i>mutants of L5178Y mouse lymphoma cells.
BMC Bioinform., 2006
Differential gene expression in mouse primary hepatocytes exposed to the peroxisome proliferator-activated receptor alpha agonists.
BMC Bioinform., 2006
Integrating time-course microarray gene expression profiles with cytotoxicity for identification of biomarkers in primary rat hepatocytes exposed to cadmium.
Bioinform., 2006
2005
Decision Forest Analysis of 61 Single Nucleotide Polymorphisms in a Case-Control Study of Esophageal Cancer; a novel method.
BMC Bioinform., 2005
BMC Bioinform., 2005
Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential.
BMC Bioinform., 2005
Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS).
BMC Bioinform., 2005
Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling.
BMC Bioinform., 2005
2004
Multi-class tumor classification by discriminant partial least squares using microarray gene expression data and assessment of classification models.
Comput. Biol. Chem., 2004
2003
Decision Forest: Combining the Predictions of Multiple Independent Decision Tree Models.
J. Chem. Inf. Comput. Sci., 2003
An Approach to Comparative Analysis of Chromatographic Fingerprints for Assuring the Quality of Botanical Drugs.
J. Chem. Inf. Comput. Sci., 2003
2001
1998
Evaluation of Quantitative Structure-Activity Relationship Methods for Large-Scale Prediction of Chemicals Binding to the Estrogen Receptor.
J. Chem. Inf. Comput. Sci., 1998
1995
J. Comput. Chem., 1995