Roger Perkins

According to our database, Roger Perkins authored at least 25 papers between 1998 and 2021.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2021

Text Fingerprinting and Topic Mining in the Prescription Opioid Use Literature.

Huyen Le, Junxiu Zhou, Weizhong Zhao, Roger Perkins, Weigong Ge, Beverly Lyn-Cook, Henry Francis, Huixiao Hong, Weida Tong, Wen Zou

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2017

Best Setting of Model Parameters in Applying Topic Modeling on Textual Documents.

Wen Zou, Weizhong Zhao, James J. Chen, Roger Perkins

Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016

Erratum to: A novel procedure on next generation sequencing data analysis using text mining algorithm.

Weizhong Zhao, James J. Chen, Roger Perkins, Yuping Wang, Zhichao Liu, Huixiao Hong, Weida Tong, Wen Zou

BMC Bioinform., 2016

A novel procedure on next generation sequencing data analysis using text mining algorithm.

Weizhong Zhao, James J. Chen, Roger Perkins, Yuping Wang, Zhichao Liu, Huixiao Hong, Weida Tong, Wen Zou

BMC Bioinform., 2016

2015

A heuristic approach to determine an appropriate number of topics in topic modeling.

Weizhong Zhao, James J. Chen, Roger Perkins, Zhichao Liu, Weigong Ge, Yijun Ding, Wen Zou

BMC Bioinform., December, 2015

2014

Whole genome sequencing of 35 individuals provides insights into the genetic architecture of Korean population.

Wenqian Zhang, Joe Meehan, Zhenqiang Su, Hui Wen Ng, Mao Shu, Heng Luo, Weigong Ge, Roger Perkins, Weida Tong, Huixiao Hong

BMC Bioinform., 2014

Competitive molecular docking approach for predicting estrogen receptor subtype α agonists and antagonists.

Hui Wen Ng, Wenqian Zhang, Mao Shu, Heng Luo, Weigong Ge, Roger Perkins, Weida Tong, Huixiao Hong

BMC Bioinform., 2014

2013

Homology modeling, molecular docking, and molecular dynamics simulations elucidated α-fetoprotein binding modes.

Jie Shen, Wenqian Zhang, Hong Fang, Roger Perkins, Weida Tong, Huixiao Hong

BMC Bioinform., 2013

2011

Selecting a single model or combining multiple models for microarray-based classifier development? - A comparative analysis based on large and diverse datasets generated from the MAQC-II project.

Minjun Chen, Leming M. Shi, Reagan Kelly, Roger Perkins, Hong Fang, Weida Tong

BMC Bioinform., 2011

2010

The EDKB: an established knowledge base for endocrine disrupting chemicals.

Don Ding, Lei Xu, Hong Fang, Huixiao Hong, Roger Perkins, Steve Harris, Edward D. Bearden, Leming Shi, Weida Tong

BMC Bioinform., 2010

2009

The Accurate Prediction of Protein Family from Amino Acid Sequence by Measuring Features of Sequence Fragments.

Huixiao Hong, Qilong Hong, Roger Perkins, Leming M. Shi, Hong Fang, Zhenqiang Su, Yvonne P. Dragan, James C. Fuscoe, Weida Tong

J. Comput. Biol., 2009

2008

Mold², Molecular Descriptors from 2D Structures for Chemoinformatics and Toxicoinformatics.

Huixiao Hong, Qian Xie, Weigong Ge, Feng Qian, Hong Fang, Leming Shi, Zhenqiang Su, Roger Perkins, Weida Tong

J. Chem. Inf. Model., 2008

Very Important Pool (VIP) genes - an application for microarray-based molecular signatures.

Zhenqiang Su, Huixiao Hong, Hong Fang, Leming M. Shi, Roger Perkins, Weida Tong

BMC Bioinform., 2008

The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies.

Leming M. Shi, Wendell D. Jones, Roderick V. Jensen, Stephen C. Harris, Roger Perkins, Federico M. Goodsaid, Lei Guo, Lisa J. Croner, Cecilie Boysen, Hong Fang, Feng Qian, Shashi Amur, Wenjun Bao, Catalin C. Barbacioru, Vincent Bertholet, Xiaoxi Megan Cao, Tzu-Ming Chu, Patrick J. Collins, Xiao-hui Fan, Felix W. Frueh

BMC Bioinform., 2008

Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples.

Huixiao Hong, Zhenqiang Su, Weigong Ge, Leming M. Shi, Roger Perkins, Hong Fang, Joshua Xu, James J. Chen, Tao Han, Jim Kaput, James C. Fuscoe, Weida Tong

BMC Bioinform., 2008

2007

Consensus analysis of multiple classifiers using non-repetitive variables: Diagnostic application to microarray gene expression data.

Zhenqiang Su, Huixiao Hong, Roger Perkins, Xueguang Shao, Wensheng Cai, Weida Tong

Comput. Biol. Chem., 2007

2006

GOFFA: Gene Ontology For Functional Analysis - A FDA Gene Ontology Tool for Analysis of Genomic and Proteomic Data.

Hongmei Sun, Hong Fang, Tao Chen, Roger Perkins, Weida Tong

BMC Bioinform., 2006

2005

Decision Forest Analysis of 61 Single Nucleotide Polymorphisms in a Case-Control Study of Esophageal Cancer; a novel method.

Qian Xie, Luke D. Ratnasinghe, Huixiao Hong, Roger Perkins, Ze-Zhong Tang, Nan Hu, Philip R. Taylor, Weida Tong

BMC Bioinform., 2005

Microarray scanner calibration curves: characteristics and implications.

Leming M. Shi, Weida Tong, Zhenqiang Su, Tao Han, Jing Han, Raj K. Puri, Hong Fang, Felix W. Frueh, Federico M. Goodsaid, Lei Guo, William S. Branham, James J. Chen, Z. Alex Xu, Stephen C. Harris, Huixiao Hong, Qian Xie, Roger Perkins, James C. Fuscoe

BMC Bioinform., 2005

Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential.

Leming M. Shi, Weida Tong, Hong Fang, Uwe Scherf, Jing Han, Raj K. Puri, Felix W. Frueh, Federico M. Goodsaid, Lei Guo, Zhenqiang Su, Tao Han, James C. Fuscoe, Z. Alex Xu, Tucker A. Patterson, Huixiao Hong, Qian Xie, Roger Perkins, James J. Chen, Daniel A. Casciano

BMC Bioinform., 2005

Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS).

Huixiao Hong, Yvonne P. Dragan, Joshua Epstein, Candee Teitel, Bangzheng Chen, Qian Xie, Hong Fang, Leming M. Shi, Roger Perkins, Weida Tong

BMC Bioinform., 2005

Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling.

Hong Fang, Weida Tong, Roger Perkins, Leming M. Shi, Huixiao Hong, X. Cao, Qian Xie, S. H. Yim, J. M. Ward, Henry C. Pitot, Yvonne P. Dragan

BMC Bioinform., 2005

2003

Decision Forest: Combining the Predictions of Multiple Independent Decision Tree Models.

Weida Tong, Huixiao Hong, Hong Fang, Qian Xie, Roger Perkins

J. Chem. Inf. Comput. Sci., 2003

2001

QSAR Models Using a Large Diverse Set of Estrogens.

Leming M. Shi, Hong Fang, Weida Tong, Jie Wu, Roger Perkins, Robert M. Blair, William S. Branham, Stacey L. Dial, Carrie L. Moland, Daniel M. Sheehan

J. Chem. Inf. Comput. Sci., 2001

1998

Evaluation of Quantitative Structure-Activity Relationship Methods for Large-Scale Prediction of Chemicals Binding to the Estrogen Receptor.

Weida Tong, David R. Lowis, Roger Perkins, Yu Chen, William J. Welsh, Dean W. Goddette, Trevor W. Heritage, Daniel M. Sheehan

J. Chem. Inf. Comput. Sci., 1998