Leming Shi

According to our database1, Leming Shi authored at least 35 papers between 1998 and 2019.

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In proceedings 
PhD thesis 


On csauthors.net:


PreMedKB: an integrated precision medicine knowledgebase for interpreting relationships between diseases, genes, variants and drugs.
Nucleic Acids Research, 2019

Correction to: Similarities and differences between variants called with human reference genome HG19 or HG38.
BMC Bioinformatics, 2019

Similarities and differences between variants called with human reference genome HG19 or HG38.
BMC Bioinformatics, 2019

A multi-omic analysis of human naïve CD4+ T cells.
BMC Systems Biology, 2015

DDI-CPI, a server that predicts drug-drug interactions through implementing the chemical-protein interactome.
Nucleic Acids Research, 2014

Estimating relative noise to signal in DNA microarray data.
IJBRA, 2013

Good practice guidelines for biomarker discovery from array data: a case study for breast cancer prognosis.
BMC Systems Biology, 2013

An adaptive feature selection method for microarray data analysis.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

Exploring Off-Targets and Off-Systems for Adverse Drug Reactions via Chemical-Protein Interactome - Clozapine-Induced Agranulocytosis as a Case Study.
PLoS Computational Biology, 2011

DRAR-CPI: a server for identifying drug repositioning potential and adverse drug reactions via the chemical-protein interactome.
Nucleic Acids Research, 2011

Selecting a single model or combining multiple models for microarray-based classifier development? - A comparative analysis based on large and diverse datasets generated from the MAQC-II project.
BMC Bioinformatics, 2011

The MicroArray Quality Control (MAQC) Project and Cross-Platform Analysis of Microarray Data.
Proceedings of the Handbook of Statistical Bioinformatics., 2011

Evaluation of gene expression data generated from expired Affymetrix GeneChip® microarrays using MAQC reference RNA samples.
BMC Bioinformatics, 2010

The EDKB: an established knowledge base for endocrine disrupting chemicals.
BMC Bioinformatics, 2010

The Accurate Prediction of Protein Family from Amino Acid Sequence by Measuring Features of Sequence Fragments.
Journal of Computational Biology, 2009

Microarray platform consistency is revealed by biologically functional analysis of gene expression profiles.
BMC Bioinformatics, 2009

Mold2, Molecular Descriptors from 2D Structures for Chemoinformatics and Toxicoinformatics.
Journal of Chemical Information and Modeling, 2008

Very Important Pool (VIP) genes - an application for microarray-based molecular signatures.
BMC Bioinformatics, 2008

The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies.
BMC Bioinformatics, 2008

Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples.
BMC Bioinformatics, 2008

Analysis of gene expression changes in relation to toxicity and tumorigenesis in the livers of Big Blue transgenic rats fed comfrey (Symphytum officinale).
BMC Bioinformatics, 2006

Improvement in the Reproducibility and Accuracy of DNA Microarray Quantification by Optimizing Hybridization Conditions.
BMC Bioinformatics, 2006

Differential gene expression in mouse primary hepatocytes exposed to the peroxisome proliferator-activated receptor alpha agonists.
BMC Bioinformatics, 2006

Gene Expression Profiles Distinguish the Carcinogenic Effects of Aristolochic Acid in Target (Kidney) and Non-target (Liver) Tissues in Rats.
BMC Bioinformatics, 2006

Integrating time-course microarray gene expression profiles with cytotoxicity for identification of biomarkers in primary rat hepatocytes exposed to cadmium.
Bioinformatics, 2006

A microarray study of MPP+-treated PC12 Cells: Mechanisms of toxicity (MOT) analysis using bioinformatics tools.
BMC Bioinformatics, 2005

Microarray scanner calibration curves: characteristics and implications.
BMC Bioinformatics, 2005

Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential.
BMC Bioinformatics, 2005

Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS).
BMC Bioinformatics, 2005

Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling.
BMC Bioinformatics, 2005

Eigenvalue Analysis of Peroxisome Proliferator-Activated Receptor gamma Agonists.
Journal of Chemical Information and Modeling, 2004

Multi-class tumor classification by discriminant partial least squares using microarray gene expression data and assessment of classification models.
Computational Biology and Chemistry, 2004

QSAR Models Using a Large Diverse Set of Estrogens.
Journal of Chemical Information and Computer Sciences, 2001

Mining and Visualizing Large Anticancer Drug Discovery Databases.
Journal of Chemical Information and Computer Sciences, 2000

Mining the NCI Anticancer Drug Discovery Databases: Genetic Function Approximation for the QSAR Study of Anticancer Ellipticine Analogues.
Journal of Chemical Information and Computer Sciences, 1998