James M. Hogan

According to our database, James M. Hogan authored at least 45 papers between 1992 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Sequence Representations and Their Utility for Predicting Protein-Protein Interactions.

Dhananjay Kimothi, Pravesh Biyani, James M. Hogan, Melissa J. Davis

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

2022

Collaborative Sense-Making in Genomic Research: The Role of Visualisation.

Markus Rittenbruch, Kellie Vella, Margot Brereton, James M. Hogan, Daniel Johnson, Julian Heinrich, Seán I. O'Donoghue

IEEE Trans. Vis. Comput. Graph., 2022

2020

Accelerating Binary String Comparisons with a Scalable, Streaming-Based System Architecture Based on FPGAs.

Sarah Pilz, Florian Porrmann, Martin Kaiser, Jens Hagemeyer, James M. Hogan, Ulrich Rückert

Algorithms, 2020

2019

Alignment-free inference of hierarchical and reticulate phylogenomic relationships.

Guillaume Bernard, Cheong Xin Chan, Yao-ban Chan, Xin-Yi Chua, Yingnan Cong, James M. Hogan, Stefan R. Maetschke, Mark A. Ragan

Briefings Bioinform., 2019

2018

Rapid analysis of metagenomic data using signature-based clustering.

Timothy Chappell, Shlomo Geva, James M. Hogan, Flavia Huygens, Irani U. Rathnayake, Stephen Rudd, Wayne Kelly, Dimitri Perrin

BMC Bioinform., 2018

Rapid hierarchical clustering of biological sequences.

Timothy Chappell, Shlomo Geva, James M. Hogan, Dimitri Perrin

Proceedings of the 23rd Australasian Document Computing Symposium, 2018

Protein database search using compressed k-mer vocabularies.

Lawrence Buckingham, Shlomo Geva, James M. Hogan

Proceedings of the 23rd Australasian Document Computing Symposium, 2018

2017

Metric learning on biological sequence embeddings.

Dhananjay Kimothi, Ankita Shukla, Pravesh Biyani, Saket Anand, James M. Hogan

Proceedings of the 18th IEEE International Workshop on Signal Processing Advances in Wireless Communications, 2017

Iterative Design and Evaluation of Regulatory Network Visualisation at Scale.

Samuel Thomas Smith, James Michael Hogan, Xin-Yi Chua, Margot Brereton, Daniel M. Johnson, Markus Rittenbruch

Proceedings of the 13th IEEE International Conference on e-Science, 2017

Similarity Projection: A Geometric Measure for Comparison of Biological Sequences.

Lawrence Buckingham, Timothy Chappell, James M. Hogan, Shlomo Geva

Proceedings of the 13th IEEE International Conference on e-Science, 2017

Signature-based clustering for analysis of the wound microbiome.

Timothy Chappell, Shlomo Geva, James M. Hogan, Flavia Huygens, Wayne Kelly, Dimitri Perrin

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

K-Means Clustering of Biological Sequences.

Timothy Chappell, Shlomo Geva, James M. Hogan

Proceedings of the 22nd Australasian Document Computing Symposium, 2017

2016

Distributed Representations for Biological Sequence Analysis.

Dhananjay Kimothi, Akshay Soni, Pravesh Biyani, James M. Hogan

CoRR, 2016

Evaluating Viewpoint Entropy for Ribbon Representation of Protein Structure.

Julian Heinrich, Jenny Vuong, Christopher J. Hammang, A. Wu, Markus Rittenbruch, James M. Hogan, Margot Brereton, Seán I. O'Donoghue

Comput. Graph. Forum, 2016

Using videogames to improve molecular graphics tools.

Zachary Fitz-Walter, Seán I. O'Donoghue, Benedetta Frida Baldi, James M. Hogan, Daniel M. Johnson, Margot Brereton

Proceedings of the 28th Australian Conference on Computer-Human Interaction, 2016

Can Videogame Players Inform Better Scientific Visualization'.

Holly Hutson, Daniel M. Johnson, Xin-Yi Chua, James M. Hogan, Margot Brereton, Markus Rittenbruch, Benedetta Frida Baldi, Seán I. O'Donoghue

Proceedings of the 2016 Annual Symposium on Computer-Human Interaction in Play, 2016

2015

Visual Analytics for Large-Scale Bioinformatic Data Sets.

Samuel Thomas Smith, James M. Hogan, Markus Rittenbruch, Daniel M. Johnson, Margot Brereton

Proceedings of the Annual Meeting of the Australian Special Interest Group for Computer Human Interaction, 2015

Planting Bugs: A System for Testing Students' Unit Tests.

Samuel A. Brian, Richard N. Thomas, James M. Hogan, Colin J. Fidge

Proceedings of the 2015 ACM Conference on Innovation and Technology in Computer Science Education, 2015

Large Scale Comparative Visualisation of Regulatory Networks with TRNDiff.

Xin-Yi Chua, Lawrence Buckingham, James M. Hogan, Pavel S. Novichkov

Proceedings of the International Conference on Computational Science, 2015

2014

Large Scale Read Classification forNext Generation Sequencing.

James M. Hogan, Timothy Peut

Proceedings of the International Conference on Computational Science, 2014

Computational Science for Undergraduate Biologists via QUT.Bio.Excel.

Lawrence Buckingham, James M. Hogan

Proceedings of the International Conference on Computational Science, 2014

Locality-Sensitive Hashing for Protein Classification.

Lawrence Buckingham, James M. Hogan, Shlomo Geva, Wayne Kelly

Proceedings of the Twelfth Australasian Data Mining Conference, AusDM 2014, Brisbane, 2014

2013

Consensus Sigma-70 Promoter Prediction Using Hadoop.

James M. Hogan, Wayne Kelly, Felicity Newell

Proceedings of the 9th IEEE International Conference on eScience, 2013

Predicting Fault-Prone Software Modules with Rank Sum Classification.

Jaspar Cahill, James M. Hogan, Richard N. Thomas

Proceedings of the 22nd Australian Conference on Software Engineering (ASWEC 2013), 2013

2011

Recruitment Learning

Joachim Diederich, Cengiz Günay, James M. Hogan

Studies in Computational Intelligence 303, Springer, ISBN: 978-3-642-14027-3, 2011

Biomashups: the new world of exploratory bioinformatics?

James M. Hogan, Jiro Sumitomo, Paul Roe, Felicity Newell

Concurr. Comput. Pract. Exp., 2011

2008

The cross-species prediction of bacterial promoters using a support vector machine.

Michael W. Towsey, Peter Timms, James M. Hogan, Sarah A. Mathews

Comput. Biol. Chem., 2008

Comparative Studies Simplified in GPFlow.

Lawrence Buckingham, James M. Hogan, Paul Roe, Jiro Sumitomo, Michael W. Towsey

Proceedings of the Computational Science, 2008

Comparative Studies Made Simple in GPFlow.

Lawrence Buckingham, James M. Hogan, Paul Roe, Jiro Sumitomo, Michael W. Towsey

Proceedings of the 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2008), 2008

2006

The Prediction of Bacterial Transcription Start Sites Using Svms.

Michael W. Towsey, James J. Gordon, James M. Hogan

Int. J. Neural Syst., 2006

Improved prediction of bacterial transcription start sites.

James J. Gordon, Michael W. Towsey, James M. Hogan, Sarah A. Mathews, Peter Timms

Bioinform., 2006

2005

Quality Assurance in a Student-Based Agile Software Engineering Process.

Andrew Marrington, James M. Hogan, Richard N. Thomas

Proceedings of the 16th Australian Software Engineering Conference (ASWEC 2005), 31 March, 2005

Developing the Software Engineering Team.

James M. Hogan, Richard N. Thomas

Proceedings of the Seventh Australasian Computing Education Conference (ACE 2005), 2005

Tight Spirals and Industry Clients: The Modern SE Education Experience.

James M. Hogan, Glenn Smith, Richard N. Thomas

Proceedings of the Seventh Australasian Computing Education Conference (ACE 2005), 2005

2004

Developing and Delivering a Software Internationalisation Subject.

Tony R. Sahama, Chris Ho-Stuart, James M. Hogan

Proceedings of the ACSW Frontiers 2004, 2004 ACSW Workshops, 2004

Key Challenges in Software Internationalisation.

James M. Hogan, Chris Ho-Stuart, Bihn Pham

Proceedings of the ACSW Frontiers 2004, 2004 ACSW Workshops, 2004

2002

Recruitment learning in randomly connected neural networks.

James M. Hogan

PhD thesis, 2002

Advanced mean field methods: theory and practice: M. Opper and D. Saad (Eds.); MIT Press, Cambridge, MA, 2001, 300pp. ISBN 0-262-15054-9.

James M. Hogan

Neurocomputing, 2002

The Real World Software Process.

James M. Hogan, Glenn Smith, Richard N. Thomas

Proceedings of the 9th Asia-Pacific Software Engineering Conference (APSEC 2002), 2002

The Java Metrics Reporter- An Extensible Tool for 00 Software Analysis.

Jaspar Cahill, James M. Hogan, Richard N. Thomas

Proceedings of the 9th Asia-Pacific Software Engineering Conference (APSEC 2002), 2002

2001

Recruitment Learning Of Boolean Functions In Sparse Random Networks.

James M. Hogan, Joachim Diederich

Int. J. Neural Syst., 2001

1998

Selective Attention and the Acquisition of Spatial Semantics.

James M. Hogan, Joachim Diederich, Gerard D. Finn

Proceedings of the Joint Conference on New Methods in Language Processing and Computational Natural Language Learning, 1998

1997

Australian Approaches to Internet Content Regulation.

James M. Hogan, Peter C. J. James

Aust. Comput. J., 1997

1993

A chosen plaintext attack on an adaptive arithmetic coding compression algorithm.

Helen A. Bergen, James M. Hogan

Comput. Secur., 1993

1992

Data security in a fixed-model arithmetic coding compression algorithm.

Helen A. Bergen, James M. Hogan

Comput. Secur., 1992