Jiao Yuan

According to our database, Jiao Yuan authored at least 12 papers between 2014 and 2026.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2026

Investigating Data Pruning for Pretraining Biological Foundation Models at Scale.

Yifan Wu, Jiyue Jiang, Xichen Ye, Yiqi Wang, Chang Zhou, Yitao Xu, Jiayang Chen, He Hu, Weizhong Zhang, Cheng Jin, Jiao Yuan, Yu Li

Proceedings of the Fortieth AAAI Conference on Artificial Intelligence, 2026

RMSAGen: Integrating Multiple Sequence Alignment for Function RNA Design.

Jiyue Jiang, Yanyu Chen, Qingchuan Zhang, Jiayi Li, Xiangyu Shi, Chang Zhou, Ziqian Lin, Jiuming Wang, Dongchen He, Liang Hong, Qintong Li, Pengan Chen, Jiayang Chen, Xinrui Zhang, Jiao Yuan, Tianqing Zhang, Yu Li

Proceedings of the Fortieth AAAI Conference on Artificial Intelligence, 2026

2025

Artificial intelligence in bioinformatics: a survey.

Jiyue Jiang, Yunke Li, Shiwei Cao, Yuheng Shan, Yuexing Liu, Tianyi Fei, Yule Yu, Yi Feng, Yu Li, Yixue Li, Jiao Yuan

Briefings Bioinform., November, 2025

A data-intelligence-intensive bioinformatics copilot system for large-scale omics research and scientific insights.

Yang Liu, Rongbo Shen, Lu Zhou, Qingyu Xiao, Jiao Yuan, Yixue Li

Briefings Bioinform., July, 2025

RBPtool: A Deep Language Model Framework for Multi-Resolution RBP-RNA Binding Prediction and RNA Molecule Design.

Jiyue Jiang, Yitao Xu, Zikang Wang, Yihan Ye, Yanruisheng Shao, Yuheng Shan, Jiuming Wang, Xiaodan Fan, Jiao Yuan, Yu Li

Proceedings of the 2025 Conference on Empirical Methods in Natural Language Processing, 2025

2024

Graph domain adaptation-based framework for gene expression enhancement and cell type identification in large-scale spatially resolved transcriptomics.

Rongbo Shen, Meiling Cheng, Wencang Wang, Qi Fan, Huan Yan, Jiayue Wen, Zhiyuan Yuan, Jianhua Yao, Yixue Li, Jiao Yuan

Briefings Bioinform., November, 2024

2020

A Mining Frequent Itemsets Algorithm in Stream Data Based on Sliding Time Decay Window.

Xin Lu, Shaonan Jin, Xun Wang, Jiao Yuan, Kun Fu, Ke Yang

Proceedings of the AIPR 2020: 3rd International Conference on Artificial Intelligence and Pattern Recognition, 2020

2018

Analysis and Optimization of Bottlenecks via Simulation.

Jiao Yuan, Runtong Zhang

Proceedings of the 2018 IEEE International Conference on Industrial Engineering and Engineering Management, 2018

2016

Computational identification of piRNA targets on mouse mRNAs.

Jiao Yuan, Peng Zhang, Ya Cui, Jiajia Wang, Geir Skogerbø, Da-Wei Huang, Runsheng Chen, Shunmin He

Bioinform., 2016

NPInter v3.0: an upgraded database of noncoding RNA-associated interactions.

Yajing Hao, Wei Wu, Hui Li, Jiao Yuan, Jianjun Luo, Yi Zhao, Runsheng Chen

Database J. Biol. Databases Curation, 2016

2014

NPInter v2.0: an updated database of ncRNA interactions.

Jiao Yuan, Wei Wu, Chaoyong Xie, Guoguang Zhao, Yi Zhao, Runsheng Chen

Nucleic Acids Res., 2014

NONCODEv4: exploring the world of long non-coding RNA genes.

Chaoyong Xie, Jiao Yuan, Hui Li, Ming Li, Guoguang Zhao, Dechao Bu, Weimin Zhu, Wei Wu, Runsheng Chen, Yi Zhao

Nucleic Acids Res., 2014