Joanna Sarzynska

According to our database, Joanna Sarzynska authored at least 8 papers between 2014 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2022

RNAspider: a webserver to analyze entanglements in RNA 3D structures.

Kamil Luwanski, Vladyslav Hlushchenko, Mariusz Popenda, Tomasz Zok, Joanna Sarzynska, Daniil Martsich, Marta Szachniuk, Maciej Antczak

Nucleic Acids Res., 2022

Data-informed reparameterization of modified RNA and the effect of explicit water models: application to pseudouridine and derivatives.

Nivedita Dutta, Indrajit Deb, Joanna Sarzynska, Ansuman Lahiri

J. Comput. Aided Mol. Des., 2022

2021

How bioinformatics resources work with G4 RNAs.

Joanna Miskiewicz, Joanna Sarzynska, Marta Szachniuk

Briefings Bioinform., 2021

2020

Molecular Dynamics Simulation of the Conformational Preferences of Pseudouridine Derivatives: Improving the Distribution in the Glycosidic Torsion Space.

Nivedita Dutta, Joanna Sarzynska, Ansuman Lahiri

J. Chem. Inf. Model., 2020

Topology-based classification of tetrads and quadruplex structures.

Mariusz Popenda, Joanna Miskiewicz, Joanna Sarzynska, Tomasz Zok, Marta Szachniuk

Bioinform., 2020

2017

Modeling of the catalytic core of Arabidopsis thaliana Dicer-like 4 protein and its complex with double-stranded RNA.

Agnieszka Mickiewicz, Joanna Sarzynska, Maciej Milostan, Anna Kurzynska-Kokorniak, Agnieszka Rybarczyk, Piotr Lukasiak, Tadeusz Kulinski, Marek Figlerowicz, Jacek Blazewicz

Comput. Biol. Chem., 2017

2016

Reparameterizations of the <i>χ</i> Torsion and Lennard-Jones <i>σ</i> Parameters Improve the Conformational Characteristics of Modified Uridines.

Indrajit Deb, Rupak Pal, Joanna Sarzynska, Ansuman Lahiri

J. Comput. Chem., 2016

2014

Conformational Preferences of Modified Uridines: Comparison of AMBER Derived Force Fields.

Indrajit Deb, Joanna Sarzynska, Lennart Nilsson, Ansuman Lahiri

J. Chem. Inf. Model., 2014