Lennart Nilsson

According to our database, Lennart Nilsson authored at least 12 papers between 1999 and 2018.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2018

Modeling pK Shift in DNA Triplexes Containing Locked Nucleic Acids.

Yossa Dwi Hartono, You Xu, Andrey Karshikoff, Lennart Nilsson, Alessandra Villa

J. Chem. Inf. Model., 2018

2017

The free energy of locking a ring: Changing a deoxyribonucleoside to a locked nucleic acid.

You Xu, Alessandra Villa, Lennart Nilsson

J. Comput. Chem., 2017

2016

Additive CHARMM force field for naturally occurring modified ribonucleotides.

You Xu, Kenno Vanommeslaeghe, Alexey Aleksandrov, Alexander D. MacKerell Jr., Lennart Nilsson

J. Comput. Chem., 2016

2014

Conformational Preferences of Modified Uridines: Comparison of AMBER Derived Force Fields.

Indrajit Deb, Joanna Sarzynska, Lennart Nilsson, Ansuman Lahiri

J. Chem. Inf. Model., 2014

2011

Impact of 2′-hydroxyl sampling on the conformational properties of RNA: Update of the CHARMM all-atom additive force field for RNA.

Elizabeth J. Denning, U. Deva Priyakumar, Lennart Nilsson, Alexander D. MacKerell Jr.

J. Comput. Chem., 2011

2009

How Thioredoxin Dissociates Its Mixed Disulfide.

Goedele Roos, Nicolas Foloppe, Koen Van Laer, Lode Wyns, Lennart Nilsson, Paul Geerlings, Joris Messens

PLoS Comput. Biol., 2009

Efficient table lookup without inverse square roots for calculation of pair wise atomic interactions in classical simulations.

Lennart Nilsson

J. Comput. Chem., 2009

CHARMM: The biomolecular simulation program.

Bernard R. Brooks, Charles L. Brooks III, Alexander D. MacKerell Jr., Lennart Nilsson, Robert J. Petrella, Benoît Roux, Y. Won, G. Archontis, Christian Bartels, Stefan Boresch, Amedeo Caflisch, Leo S. D. Caves, Qiang Cui, Aaron R. Dinner, Michael Feig, S. Fischer, Jiali Gao, Milan Hodoscek, Wonpil Im, Krzysztof Kuczera, Themis Lazaridis, J. Ma, Victor Ovchinnikov, Emanuele Paci, Richard W. Pastor, C. B. Post, J. Z. Pu, Michael Schaefer, Bruce Tidor, Richard M. Venable, H. Lee Woodcock III, X. Wu, W. Yang, Darrin M. York, Martin Karplus

J. Comput. Chem., 2009

2006

A Highly Efficient <i>Ab Initio</i> Tight-Binding-Like Approximate Density-Functional Quantum Mechanical Method.

Yaoquan Tu, Lennart Nilsson, Aatto Laaksonen

Proceedings of the Applied Parallel Computing. State of the Art in Scientific Computing, 2006

2003

Improved precision and efficiency of free energy calculations for small systems using lambda-scaled atomic masses and separating conformational and transformational sampling.

Peter Carlsson, Lennart Nilsson

J. Comput. Chem., 2003

2002

Structure and dynamics of liquid water with different long-range interaction truncation and temperature control methods in molecular dynamics simulations.

Pekka Mark, Lennart Nilsson

J. Comput. Chem., 2002

1999

Some practical aspects of free energy calculations from molecular dynamics simulation.

Srikanta Sen, Lennart Nilsson

J. Comput. Chem., 1999