Joanne Berghout

According to our database, Joanne Berghout authored at least 13 papers between 2014 and 2021.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2021

'Single-subject studies'-derived analyses unveil altered biomechanisms between very small cohorts: implications for rare diseases.

Dillon Aberasturi, Nima Pouladi, Samir Rachid Zaim, Colleen Kenost, Joanne Berghout, Walter W. Piegorsch, Yves A. Lussier

Bioinform., 2021

Computational Challenges and Artificial Intelligence in Precision Medicine.

Olga Afanasiev, Joanne Berghout, Steven E. Brenner, Martha L. Bulyk, Dana C. Crawford, Jonathan H. Chen, Roxana Daneshjou, Lukasz Kidzinski

Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021

2020

Correction to: binomialRF: interpretable combinatoric efficiency of random forests to identify biomarker interactions.

Samir Rachid Zaim, Colleen Kenost, Joanne Berghout, Wesley Chiu, Liam Wilson, Hao Helen Zhang, Yves A. Lussier

BMC Bioinform., 2020

binomialRF: interpretable combinatoric efficiency of random forests to identify biomarker interactions.

Samir Rachid Zaim, Colleen Kenost, Joanne Berghout, Wesley Chiu, Liam Wilson, Hao Helen Zhang, Yves A. Lussier

BMC Bioinform., 2020

2019

Developing a 'personalome' for precision medicine: emerging methods that compute interpretable effect sizes from single-subject transcriptomes.

Francesca Vitali, Qike Li, A. Grant Schissler, Joanne Berghout, Colleen Kenost, Yves A. Lussier

Briefings Bioinform., 2019

Precision drug repurposing via convergent eQTL-based molecules and pathway targeting independent disease-associated polymorphisms.

Francesca Vitali, Joanne Berghout, Jung-wei Fan, Jianrong Li, Qike Li, Haiquan Li, Yves A. Lussier

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

Reading between the genes: interpreting non-coding DNA in high-throughput.

Joanne Berghout, Yves A. Lussier, Francesca Vitali, Martha L. Bulyk, Maricel G. Kann, Jason H. Moore

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

Interpretation of 'Omics dynamics in a single subject using local estimates of dispersion between two transcriptomes.

Qike Li, Samir Rachid Zaim, Dillon Aberasturi, Joanne Berghout, Haiquan Li, Francesca Vitali, Colleen Kenost, Hao Helen Zhang, Yves A. Lussier

Proceedings of the AMIA 2019, 2019

2018

Session Introduction.

Yves A. Lussier, Joanne Berghout, Francesca Vitali, Kenneth S. Ramos, Maricel G. Kann, Jason H. Moore

Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

Single subject transcriptome analysis to identify functionally signed gene set or pathway activity.

Joanne Berghout, Qike Li, Nima Pouladi, Jianrong Li, Yves A. Lussier

Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

2017

kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects.

Qike Li, A. Grant Schissler, Vincent Gardeux, Joanne Berghout, Ikbel Achour, Colleen Kenost, Haiquan Li, Hao Helen Zhang, Yves A. Lussier

J. Biomed. Informatics, 2017

A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations.

Vincent Gardeux, Joanne Berghout, Ikbel Achour, A. Grant Schissler, Qike Li, Colleen Kenost, Jianrong Li, Yuan Shang, Anthony Bosco, Donald Saner, Marilyn J. Halonen, Daniel Jackson, Haiquan Li, Fernando D. Martinez, Yves A. Lussier

J. Am. Medical Informatics Assoc., 2017

2014

The mouse Gene Expression Database (GXD): 2014 update.

Constance M. Smith, Jacqueline H. Finger, Terry F. Hayamizu, Ingeborg J. McCright, Jingxia Xu, Joanne Berghout, Jeff Campbell, Lori E. Corbani, Kim L. Forthofer, Pete J. Frost, Dave Miers, David R. Shaw, Kevin R. Stone, Janan T. Eppig, James A. Kadin, Joel E. Richardson, Martin Ringwald

Nucleic Acids Res., 2014