Yves A. Lussier
Orcid: 0000-0001-9854-1005Affiliations:
- University of Arizona, Tucson, AZ, USA
- University of Chicago, USA (former)
According to our database1,
Yves A. Lussier
authored at least 116 papers
between 1997 and 2021.
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Bibliography
2021
'Single-subject studies'-derived analyses unveil altered biomechanisms between very small cohorts: implications for rare diseases.
Bioinform., 2021
2020
Correction to: binomialRF: interpretable combinatoric efficiency of random forests to identify biomarker interactions.
BMC Bioinform., 2020
binomialRF: interpretable combinatoric efficiency of random forests to identify biomarker interactions.
BMC Bioinform., 2020
2019
Developing a 'personalome' for precision medicine: emerging methods that compute interpretable effect sizes from single-subject transcriptomes.
Briefings Bioinform., 2019
Precision drug repurposing via convergent eQTL-based molecules and pathway targeting independent disease-associated polymorphisms.
Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019
Translational informatics of population Health: How large biomolecular and clinical datasets unite.
Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019
Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019
DSL-TEACH: Data Science Literacy Training to Enhance Approaches for Clinical decision-making in Healthcare.
Proceedings of the AMIA 2019, 2019
Interpretation of 'Omics dynamics in a single subject using local estimates of dispersion between two transcriptomes.
Proceedings of the AMIA 2019, 2019
2018
Proceedings of the Encyclopedia of Database Systems, Second Edition, 2018
Proceedings of the Encyclopedia of Database Systems, Second Edition, 2018
Physician nurse care: A new use of UMLS to measure professional contribution: Are we talking about the same patient a new graph matching algorithm?
Int. J. Medical Informatics, 2018
Emergence of pathway-level composite biomarkers from converging gene set signals of heterogeneous transcriptomic responses.
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018
Convergent downstream candidate mechanisms of independent intergenic polymorphisms between co-classified diseases implicate epistasis among noncoding elements.
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018
Single subject transcriptome analysis to identify functionally signed gene set or pathway activity.
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018
Systems of Phenome-Exposome Associations Unveiled by Mining Practice-Based Evidence with Environmental Exposures.
Proceedings of the AMIA 2018, 2018
2017
kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects.
J. Biomed. Informatics, 2017
A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations.
J. Am. Medical Informatics Assoc., 2017
Proceedings of the Summit on Clinical Research Informatics, 2017
Word-of-Mouth Innovation: Hypothesis Generation for Supplement Repurposing based on Consumer Reviews.
Proceedings of the AMIA 2017, 2017
2016
Rethinking the role and impact of health information technology: informatics as an interventional discipline.
BMC Medical Informatics Decis. Mak., 2016
Analysis of aggregated cell-cell statistical distances within pathways unveils therapeutic-resistance mechanisms in circulating tumor cells.
Bioinform., 2016
2015
eQTL networks unveil enriched mRNA master integrators downstream of complex disease-associated SNPs.
J. Biomed. Informatics, 2015
Towards a PBMC "virogram assay" for precision medicine: Concordance between ex vivo and in vivo viral infection transcriptomes.
J. Biomed. Informatics, 2015
Challenges and remediation for Patient Safety Indicators in the transition to ICD-10-CM.
J. Am. Medical Informatics Assoc., 2015
Metrics and tools for consistent cohort discovery and financial analyses post-transition to ICD-10-CM.
J. Am. Medical Informatics Assoc., 2015
Dynamic changes of RNA-sequencing expression for precision medicine: N-of-1-pathways Mahalanobis distance within pathways of single subjects predicts breast cancer survival.
Bioinform., 2015
2014
'N-of-1-<i>pathways</i>' unveils personal deregulated mechanisms from a single pair of RNA-Seq samples: towards precision medicine.
J. Am. Medical Informatics Assoc., 2014
Proceedings of the INLG 2014, 2014
Proceedings of the AMIA 2014, 2014
COPD Hospitalization Risk Increased with Distinct Patterns of Multiple Systems Comorbidities Unveiled by Network Modeling.
Proceedings of the AMIA 2014, 2014
2013
People, organizational, and leadership factors impacting informatics support for clinical and translational research.
BMC Medical Informatics Decis. Mak., 2013
Research and applications: Network models of genome-wide association studies uncover the topological centrality of protein interactions in complex diseases.
J. Am. Medical Informatics Assoc., 2013
Research and applications: The discriminatory cost of ICD-10-CM transition between clinical specialties: metrics, case study, and mitigating tools.
J. Am. Medical Informatics Assoc., 2013
Interpreting Personal Transcriptomes: Personalized Mechanism-Scale Profiling of RNA-seq Data.
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013
HospSum: Integrating physician discharge notes with coded nursing care data to generate patient-centric summaries.
Proceedings of the AMIA 2013, 2013
2012
Single Sample Expression-Anchored Mechanisms Predict Survival in Head and Neck Cancer.
PLoS Comput. Biol., 2012
J. Biomed. Informatics, 2012
Translating Mendelian and complex inheritance of Alzheimer's disease genes for predicting unique personal genome variants.
J. Am. Medical Informatics Assoc., 2012
Advantages of genomic complexity: bioinformatics opportunities in microRNA cancer signatures.
J. Am. Medical Informatics Assoc., 2012
Complex-disease networks of trait-associated single-nucleotide polymorphisms (SNPs) unveiled by information theory.
J. Am. Medical Informatics Assoc., 2012
Towards Mechanism Classifiers: Expression-anchored Gene Ontology Signature Predicts Clinical Outcome in Lung Adenocarcinoma Patients.
Proceedings of the AMIA 2012, 2012
2011
Translational bioinformatics: linking knowledge across biological and clinical realms.
J. Am. Medical Informatics Assoc., 2011
Protein-network modeling of prostate cancer gene signatures reveals essential pathways in disease recurrence.
J. Am. Medical Informatics Assoc., 2011
<i>GO-Module</i>: functional synthesis and improved interpretation of Gene Ontology patterns.
Bioinform., 2011
Proceedings of the 24th IEEE International Symposium on Computer-Based Medical Systems, 2011
2010
Network Modeling Identifies Molecular Functions Targeted by miR-204 to Suppress Head and Neck Tumor Metastasis.
PLoS Comput. Biol., 2010
Kinase inhibition-related adverse events predicted from in vitro kinome and clinical trial data.
J. Biomed. Informatics, 2010
Protein interaction network underpins concordant prognosis among heterogeneous breast cancer signatures.
J. Biomed. Informatics, 2010
Stromal microenvironment processes unveiled by biological component analysis of gene expression in xenograft tumor models.
BMC Bioinform., 2010
2009
Proceedings of the Encyclopedia of Database Systems, 2009
Mechanism-anchored profiling derived from epigenetic networks predicts outcome in acute lymphoblastic leukemia.
BMC Bioinform., 2009
PhenoGO: an integrated resource for the multiscale mining of clinical and biological data.
BMC Bioinform., 2009
BMC Bioinform., 2009
Robust methods for accurate diagnosis using pan-microbiological oligonucleotide microarrays.
BMC Bioinform., 2009
BMC Bioinform., 2009
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009
2008
2007
J. Biomed. Informatics, 2007
Research Paper: Topological Analysis of Large-scale Biomedical Terminology Structures.
J. Am. Medical Informatics Assoc., 2007
Partitioning knowledge bases between advanced notification and clinical decision support systems.
Decis. Support Syst., 2007
BMC Bioinform., 2007
Proceedings of the Biocomputing 2007, 2007
Information theory applied to the sparse gene ontology annotation network to predict novel gene function.
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007
Information-Theoretic Classification of SNOMED Improves the Organization of Context-Sensitive Excerpts from Cochrane Reviews.
Proceedings of the AMIA 2007, 2007
Detection of Practice Pattern Trends through Natural Language Processing of Clinical Narratives and Biomedical Literature.
Proceedings of the AMIA 2007, 2007
2006
An Integrative Genomic Approach to Uncover Molecular Mechanisms of Prokaryotic Traits.
PLoS Comput. Biol., 2006
Terminology model discovery using natural language processing and visualization techniques.
J. Biomed. Informatics, 2006
PhenoGO: Assigning Phenotypic Context to Gene Ontology Annotations with Natural Language Processing.
Proceedings of the Biocomputing 2006, 2006
Proceedings of the KR-MED 2006, 2006
Generating Executable Knowledge for Evidence-Based Medicine Using Natural Language and Semantic Processing.
Proceedings of the AMIA 2006, 2006
2005
Visualizing information across multidimensional post-genomic structured and textual databases.
Bioinform., 2005
Proceedings of the Biocomputing 2005, 2005
Proceedings of the 3rd IEEE Conference on Pervasive Computing and Communications Workshops (PerCom 2005 Workshops), 2005
Proceedings of the AMIA 2005, 2005
Partitioning Knowledge Bases between Advanced Notification and Clinical Decision Support Systems.
Proceedings of the AMIA 2005, 2005
2004
Research Paper: Automated Encoding of Clinical Documents Based on Natural Language Processing.
J. Am. Medical Informatics Assoc., 2004
Proceedings of the Biocomputing 2004, 2004
Proceedings of the MEDINFO 2004, 2004
Proceedings of the MEDINFO 2004, 2004
Proceedings of the MEDINFO 2004, 2004
2003
Linking Biomedical Language Information and Knowledge Resources in the 21st Century: GO and UMLS.
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003
An Evaluation of Hybrid Methods for Matching Biomedical Terminologies: Mapping the Gene Ontology to the UMLS<sup>®</sup>$.
Proceedings of the New Navigators: from Professionals to Patients, 2003
Guideline Interaction: a study of interactions among drug-disease contraindication rules.
Proceedings of the AMIA 2003, 2003
Proceedings of the AMIA 2003, 2003
Putting Data Integration into Practice: Using Biomedical Terminologies to Add Structure to Existing Data Sources.
Proceedings of the AMIA 2003, 2003
2002
Extended attributes of event monitor systems for criteria-based notification modalities.
Proceedings of the AMIA 2002, 2002
Proceedings of the AMIA 2002, 2002
Proceedings of the AMIA 2002, 2002
Web-based tailoring and its effect on self-efficacy: results from the MI-HEART randomized controlled trial.
Proceedings of the AMIA 2002, 2002
Proceedings of the AMIA 2002, 2002
2001
Disambiguating Ambiguous Biomedical Terms in Biomedical Narrative Text: An Unsupervised Method.
J. Biomed. Informatics, 2001
Developing Tailored Theory-based Educational Content for WEB Applications: Illustrations from the MI-HEART Project.
Proceedings of the MEDINFO 2001, 2001
Proceedings of the AMIA 2001, 2001
Proceedings of the AMIA 2001, 2001
MI-HEART: a Comprehensive Management System to Deliver, Monitor and Measure Efficacy of Individualized Web-based Education.
Proceedings of the AMIA 2001, 2001
Harnessing Web Information Technologies for Secure, Adaptive and Individualized Health Communications.
Proceedings of the AMIA 2001, 2001
The MI-HEART Project: Information Technology (IT) for One-to-One Tailored Patient Communication.
Proceedings of the AMIA 2001, 2001
2000
Improving the Development of Composite Educational Guidelines Using Decomposition of Concept Lattices.
Proceedings of the AMIA 2000, 2000
Proceedings of the AMIA 2000, 2000
Formal combinations of guidelines: a requirement for self-administered personalized health education.
Proceedings of the AMIA 2000, 2000
Proceedings of the AMIA 2000, 2000
A Web-based System For Prediction Of Coronary Heart Disease Risk Using The Framingham Algorithm.
Proceedings of the AMIA 2000, 2000
1999
Overcoming the Barriers of Web-Based Interventions for Elder Patients: Enabling Strategies for the MI HEART Clinical Trial.
Proceedings of the AMIA 1999, 1999
Modeling patient response to acute myocardial infarction: implications for a tailored technology-based program to reduce patient delay.
Proceedings of the AMIA 1999, 1999
1998
Proceedings of the AMIA 1998, 1998
1997
Proceedings of the AMIA 1997, 1997