João Pedro de Magalhães

Orcid: 0000-0002-6363-2465

Affiliations:
  • University of Liverpool, UK


According to our database1, João Pedro de Magalhães authored at least 25 papers between 2005 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
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PhD thesis 
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Links

Online presence:

On csauthors.net:

Bibliography

2023
m6A-TSHub: Unveiling the Context-specific m<sup>6</sup>A Methylation and m<sup>6</sup>A-affecting Mutations in 23 Human Tissues.
Genom. Proteom. Bioinform., August, 2023

DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology.
Nucleic Acids Res., January, 2023

RMDisease V2.0: an updated database of genetic variants that affect RNA modifications with disease and trait implication.
Nucleic Acids Res., January, 2023

GeneFriends: gene co-expression databases and tools for humans and model organisms.
Nucleic Acids Res., January, 2023

Interpretable Ensembles of Classifiers for Uncertain Data With Bioinformatics Applications.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

2022
m5C-Atlas: a comprehensive database for decoding and annotating the 5-methylcytosine (m5C) epitranscriptome.
Nucleic Acids Res., 2022

Machine learning-based predictions of dietary restriction associations across ageing-related genes.
BMC Bioinform., 2022

2021
m6A-Atlas: a comprehensive knowledgebase for unraveling the N6-methyladenosine (m6A) epitranscriptome.
Nucleic Acids Res., 2021

RMDisease: a database of genetic variants that affect RNA modifications, with implications for epitranscriptome pathogenesis.
Nucleic Acids Res., 2021

ConsRM: collection and large-scale prediction of the evolutionarily conserved RNA methylation sites, with implications for the functional epitranscriptome.
Briefings Bioinform., 2021

2020
m7GHub: deciphering the location, regulation and pathogenesis of internal mRNA N7-methylguanosine (m7G) sites in human.
Bioinform., 2020

Using deep learning to associate human genes with age-related diseases.
Bioinform., 2020

Comparing enrichment analysis and machine learning for identifying gene properties that discriminate between gene classes.
Briefings Bioinform., 2020

2018
Human Ageing Genomic Resources: new and updated databases.
Nucleic Acids Res., 2018

A new approach for interpreting Random Forest models and its application to the biology of ageing.
Bioinform., 2018

Gene co-expression analysis for functional classification and gene-disease predictions.
Briefings Bioinform., 2018

2016
flowAI: automatic and interactive anomaly discerning tools for flow cytometry data.
Bioinform., 2016

2015
Predicting the Pro-Longevity or Anti-Longevity Effect of Model Organism Genes with New Hierarchical Feature Selection Methods.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015

GeneFriends: a human RNA-seq-based gene and transcript co-expression database.
Nucleic Acids Res., 2015

The Digital Ageing Atlas: integrating the diversity of age-related changes into a unified resource.
Nucleic Acids Res., 2015

2014
The Naked Mole Rat Genome Resource: facilitating analyses of cancer and longevity-related adaptations.
Bioinform., 2014

2013
Human Ageing Genomic Resources: Integrated databases and tools for the biology and genetics of ageing.
Nucleic Acids Res., 2013

2011
Gathering insights on disease etiology from gene expression profiles of healthy tissues.
Bioinform., 2011

2009
Meta-analysis of age-related gene expression profiles identifies common signatures of aging.
Bioinform., 2009

2005
HAGR: the Human Ageing Genomic Resources.
Nucleic Acids Res., 2005


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