Jörg Ackermann

According to our database, Jörg Ackermann authored at least 24 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Graph-theoretical prediction of biological modules in quaternary structures of large protein complexes.

Florian J. Gisdon, Mariella Zunker, Jan Niclas Wolf, Kai Prüfer, Jörg Ackermann, Christoph Welsch, Ina Koch

Bioinform., March, 2024

2023

Radiomics for therapy-specific head and neck squamous cell carcinoma survival prognostication (part I).

Simon Bernatz, Ines Böth, Jörg Ackermann, Iris Burck, Scherwin Mahmoudi, Lukas Lenga, Simon S. Martin, Jan-Erik Scholtz, Vitali Koch, Leon D. Grünewald, Ina Koch, Timo Stöver, Peter J. Wild, Ria Winkelmann, Thomas J. Vogl, Daniel Pinto dos Santos

BMC Medical Imaging, December, 2023

Comparison of radiomics models and dual-energy material decomposition to decipher abdominal lymphoma in contrast-enhanced CT.

Simon Bernatz, Vitali Koch, Daniel Pinto dos Santos, Jörg Ackermann, Leon D. Grünewald, Inga Weitkamp, Ibrahim Yel, Simon S. Martin, Lukas Lenga, Jan-Erik Scholtz, Thomas J. Vogl, Scherwin Mahmoudi

Int. J. Comput. Assist. Radiol. Surg., October, 2023

Investigation of metabolic pathways from gut microbiome analyses regarding type 2 diabetes mellitus using artificial neural networks.

Julienne Siptroth, Olga Moskalenko, Carsten Krumbiegel, Jörg Ackermann, Ina Koch, Heike Pospisil

Discov. Artif. Intell., 2023

Evaluation of automatic discrimination between benign and malignant prostate tissue in the era of high precision digital pathology.

Yauheniya Zhdanovich, Jörg Ackermann, Peter J. Wild, Jens Köllermann, Katrin Bankov, Claudia Döring, Nadine Flinner, Henning Reis, Mike Wenzel, Benedikt Höh, Philipp Mandel, Thomas J. Vogl, Patrick Harter, Katharina Filipski, Ina Koch, Simon Bernatz

BMC Bioinform., 2023

2022

Mathematical modeling of the molecular switch of TNFR1-mediated signaling pathways applying Petri net formalism and in silico knockout analysis.

Leonie Amstein, Jörg Ackermann, Jennifer Hannig, Ivan Dikic, Simone Fulda, Ina Koch

PLoS Comput. Biol., 2022

The canonical and non-canonical NF-κB pathways and their crosstalk: A comparative study based on Petri nets.

Kira Trares, Jörg Ackermann, Ina Koch

Biosyst., 2022

2021

Potential of high dimensional radiomic features to assess blood components in intraaortic vessels in non-contrast CT scans.

Scherwin Mahmoudi, Simon S. Martin, Jörg Ackermann, Yauheniya Zhdanovich, Ina Koch, Thomas J. Vogl, Moritz H. Albrecht, Lukas Lenga, Simon Bernatz

BMC Medical Imaging, 2021

PTGL: extension to graph-based topologies of cryo-EM data for large protein structures.

Jan Niclas Wolf, Marcus Keßler, Jörg Ackermann, Ina Koch

Bioinform., 2021

2020

Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma.

Jennifer Hannig, Hendrik Schäfer, Jörg Ackermann, Marie Hebel, Tim Schäfer, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann, Ina Koch

PLoS Comput. Biol., 2020

2019

isiKnock: in silico knockouts in signaling pathways.

Jennifer Hannig, Heiko Giese, Börje Schweizer, Leonie Amstein, Jörg Ackermann, Ina Koch

Bioinform., 2019

2017

Manatee invariants reveal functional pathways in signaling networks.

Leonie Amstein, Jörg Ackermann, Jennifer Scheidel, Simone Fulda, Ivan Dikic, Ina Koch

BMC Syst. Biol., 2017

2016

Quantitative Analysis.

Jörg Ackermann, Ina Koch

Proceedings of the Modeling in Systems Biology, The Petri Net Approach, 2016

In Silico Knockout Studies of Xenophagic Capturing of Salmonella.

Jennifer Scheidel, Leonie Amstein, Jörg Ackermann, Ivan Dikic, Ina Koch

PLoS Comput. Biol., 2016

APP Is a Context-Sensitive Regulator of the Hippocampal Presynaptic Active Zone.

Melanie Laßek, Jens Weingarten, Martin Wegner, Benjamin F. Mueller, Marion Rohmer, Dominic Baeumlisberger, Tabiwang N. Arrey, Meike Hick, Jörg Ackermann, Amparo Acker-Palmer, Ina Koch, Ulrike Müller, Michael Karas, Walter Volknandt

PLoS Comput. Biol., 2016

CD30 cell graphs of Hodgkin lymphoma are not scale-free - an image analysis approach.

Hendrik Schäfer, Tim Schäfer, Jörg Ackermann, Norbert Dichter, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann, Ina Koch

Bioinform., 2016

2015

Cluster analysis and visualization techniques for large datasets in complexome profiling.

Heiko Giese, Jörg Ackermann, Ulrich Brandt, Ilka Wittig, Ina Koch

PeerJ Prepr., 2015

Unsupervised image segmentation for microarray spots with irregular contours and inner holes.

Bogdan Belean, Monica Borda, Jörg Ackermann, Ina Koch, Ovidiu Balacescu

BMC Bioinform., 2015

Erratum to: MONALISA for stochastic simulations of Petri net models of biochemical systems.

Pavel Balazki, Klaus Lindauer, Jens Einloft, Jörg Ackermann, Ina Koch

BMC Bioinform., 2015

MONALISA for stochastic simulations of Petri net models of biochemical systems.

Pavel Balazki, Klaus Lindauer, Jens Einloft, Jörg Ackermann, Ina Koch

BMC Bioinform., 2015

NOVA: a software to analyze complexome profiling data.

Heiko Giese, Jörg Ackermann, Heinrich Heide, Lea Bleier, Stefan Dröse, Ilka Wittig, Ulrich Brandt, Ina Koch

Bioinform., 2015

2013

Image database analysis of Hodgkin lymphoma.

Tim Schäfer, Hendrik Schäfer, Alexander Schmitz, Jörg Ackermann, Norbert Dichter, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann, Ina Koch

Comput. Biol. Chem., 2013

MonaLisa - visualization and analysis of functional modules in biochemical networks.

Jens Einloft, Jörg Ackermann, Joachim Nöthen, Ina Koch

Bioinform., 2013

2008

Petri net modelling of gene regulation of the Duchenne muscular dystrophy.

Stefanie Grunwald, Astrid Speer, Jörg Ackermann, Ina Koch

Biosyst., 2008