Ina Koch
Orcid: 0000-0002-3621-003XAffiliations:
- Johann Wolfgang Goethe University, Institute of Computer Science, Frankfurt am Main, Germany
According to our database1,
Ina Koch
authored at least 62 papers
between 1996 and 2024.
Collaborative distances:
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Bibliography
2024
Graph-theoretical prediction of biological modules in quaternary structures of large protein complexes.
Bioinform., March, 2024
2023
Radiomics for therapy-specific head and neck squamous cell carcinoma survival prognostication (part I).
BMC Medical Imaging, December, 2023
Investigation of metabolic pathways from gut microbiome analyses regarding type 2 diabetes mellitus using artificial neural networks.
Discov. Artif. Intell., 2023
Evaluation of automatic discrimination between benign and malignant prostate tissue in the era of high precision digital pathology.
BMC Bioinform., 2023
2022
Mathematical modeling of the molecular switch of TNFR1-mediated signaling pathways applying Petri net formalism and in silico knockout analysis.
PLoS Comput. Biol., 2022
Comparison of machine learning methods with logistic regression analysis in creating predictive models for risk of critical in-hospital events in COVID-19 patients on hospital admission.
BMC Medical Informatics Decis. Mak., 2022
The canonical and non-canonical NF-κB pathways and their crosstalk: A comparative study based on Petri nets.
Biosyst., 2022
2021
Potential of high dimensional radiomic features to assess blood components in intraaortic vessels in non-contrast CT scans.
BMC Medical Imaging, 2021
PTGL: extension to graph-based topologies of cryo-EM data for large protein structures.
Bioinform., 2021
2020
Reconstruction of Protein-Protein Interaction Networks Using Homology-Based Search: Application to the Autophagy Pathway of Aging in <i>Podospora anserina</i>.
Proceedings of the Protein-Protein Interaction Networks, Methods and Protocols., 2020
Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma.
PLoS Comput. Biol., 2020
2019
Petri Nets in Systems Biology: Transition Invariants, Maximal Common Transition Sets, Transition Clusters, Mauritius Maps, and MonaLisa.
Proceedings of the Carl Adam Petri: Ideas, Personality, Impact, 2019
2017
BMC Syst. Biol., 2017
BMC Bioinform., 2017
2016
Proceedings of the Modeling in Systems Biology, The Petri Net Approach, 2016
Proceedings of the Modeling in Systems Biology, The Petri Net Approach, 2016
PLoS Comput. Biol., 2016
PLoS Comput. Biol., 2016
CD30 cell graphs of Hodgkin lymphoma are not scale-free - an image analysis approach.
Bioinform., 2016
Path2PPI: an R package to predict protein-protein interaction networks for a set of proteins.
Bioinform., 2016
HAUCA Curves for the Evaluation of Biomarker Pilot Studies with Small Sample Sizes and Large Numbers of Features.
Proceedings of the Advances in Intelligent Data Analysis XV - 15th International Symposium, 2016
2015
Cluster analysis and visualization techniques for large datasets in complexome profiling.
PeerJ Prepr., 2015
Unsupervised image segmentation for microarray spots with irregular contours and inner holes.
BMC Bioinform., 2015
Erratum to: MONALISA for stochastic simulations of Petri net models of biochemical systems.
BMC Bioinform., 2015
BMC Bioinform., 2015
2014
Database J. Biol. Databases Curation, 2014
2013
omiRas: a Web server for differential expression analysis of miRNAs derived from small RNA-Seq data.
Bioinform., 2013
Bioinform., 2013
2012
Sodium dependent glucose transporter (SGLT) 1 / 2 - elucidating inhibitor SAR and selectivity using homology modelling and 3D QSAR studies.
J. Cheminformatics, 2012
Computation and Visualization of Protein Topology Graphs Including Ligand Information.
Proceedings of the German Conference on Bioinformatics 2012, 2012
2010
Nucleic Acids Res., 2010
Exhaustive Analysis of the Modular Structure of the Spliceosomal Assembly Network: A Petri Net Approach.
Silico Biol., 2010
2009
Modeling of the U1 snRNP assembly pathway in alternative splicing in human cells using Petri nets.
Comput. Biol. Chem., 2009
2008
Modularization of biochemical networks based on classification of Petri net t-invariants.
BMC Bioinform., 2008
Biosyst., 2008
2007
Comput. Biol. Chem., 2007
2006
JProGO: a novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information.
Nucleic Acids Res., 2006
BMC Bioinform., 2006
2005
Fundam. Informaticae, 2005
BMC Bioinform., 2005
Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber.
Bioinform., 2005
2004
STEPP - Search Tool for Exploration of Petri net Paths: A new tool for Petri net-based path analysis in biochemical networks.
Silico Biol., 2004
Proceedings of the Data Integration in the Life Sciences, First International Workshop, 2004
Proceedings of the Applications and Theory of Petri Nets 2004, 2004
2003
Model Validation of Biological Pathways Using Petri Nets - Demonstrated for Apoptosis.
Proceedings of the Computational Methods in Systems Biology, First International Workshop, 2003
2002
Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae.
Bioinform., 2002
Theoretical analysis of alternative splice forms using computational methods.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002
2001
Theor. Comput. Sci., 2001
2000
Structural Analysis of Metabolic Networks: Elementary Flux Modes, Analogy to Petri Nets, and Application to Mycoplasma Pneumoniae.
Proceedings of the German Conference on Bioinformatics (GCB 2000), 2000
1999
Simulation and analysis of metabolic networks by time-dependent Petri nets.
Proceedings of the German Conference on Bioinformatics, 1999
1997
Detection of Distant Structural Similarities in a Set of Proteins Using a Fast Graph-Based Method.
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997
1996
An Algorithm for Finding Maximal Common Subtopologies in a Set of Protein Structures.
J. Comput. Biol., 1996