Joshua Orvis

According to our database, Joshua Orvis authored at least 8 papers between 2007 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain.

Seth A. Ament, Ricky S. Adkins, Robert Carter, Elena Chrysostomou, Carlo Colantuoni, Jonathan Crabtree, Heather Huot Creasy, Kylee Degatano, Victor Felix, Peter Gandt, Gwenn a Garden, Michelle G. Giglio, Brian R. Herb, Farzaneh Khajouei, Elizabeth Kiernan, Carrie McCracken, Kennedy McDaniel, Suvarna Nadendla, Lance Nickel, Dustin Olley, Joshua Orvis, Joseph P. Receveur, Mike Schor, Shreyash Sonthalia, Timothy L. Tickle, Jessica Way, Ronna Hertzano, Anup A. Mahurkar, Owen R. White

Nucleic Acids Res., January, 2023

2021

HMPDACC: a Human Microbiome Project Multi-omic data resource.

Heather Huot Creasy, Victor Felix, Jain Aluvathingal, Jonathan Crabtree, Olukemi O. Ifeonu, James Matsumura, Carrie McCracken, Lance Nickel, Joshua Orvis, Mike Schor, Michelle G. Giglio, Anup Mahurkar, Owen White

Nucleic Acids Res., 2021

2014

The <i>Aspergillus</i> Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations.

Gustavo C. Cerqueira, Martha B. Arnaud, Diane O. Inglis, Marek S. Skrzypek, Gail Binkley, Matt Simison, Stuart R. Miyasato, Jonathan Binkley, Joshua Orvis, Prachi Shah, Farrell Wymore, Gavin Sherlock, Jennifer R. Wortman

Nucleic Acids Res., 2014

2012

The <i>Aspergillus</i> Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.

Martha B. Arnaud, Gustavo C. Cerqueira, Diane O. Inglis, Marek S. Skrzypek, Jonathan Binkley, Marcus C. Chibucos, Jonathan Crabtree, Clinton Howarth, Joshua Orvis, Prachi Shah, Farrell Wymore, Gail Binkley, Stuart R. Miyasato, Matt Simison, Gavin Sherlock, Jennifer R. Wortman

Nucleic Acids Res., 2012

2010

Pathema: a clade-specific bioinformatics resource center for pathogen research.

Lauren M. Brinkac, Tanja Davidsen, Erin Beck, Anuradha Ganapathy, Elisabet Caler, Robert J. Dodson, A. Scott Durkin, Derek M. Harkins, Hernan Lorenzi, Ramana Madupu, Yinong Sebastian, Susmita Shrivastava, Mathangi Thiagarajan, Joshua Orvis, Jaideep P. Sundaram, Jonathan Crabtree, Kevin Galens, Yongmei Zhao, Jason M. Inman, Robert Montgomery, Seth Schobel, Kevin Galinsky, David M. Tanenbaum, Adam Resnick, Nikhat Zafar, Owen White, Granger G. Sutton

Nucleic Acids Res., 2010

The <i>Aspergillus</i> Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the <i>Aspergillus</i> research community.

Martha B. Arnaud, Marcus C. Chibucos, Maria C. Costanzo, Jonathan Crabtree, Diane O. Inglis, Adil Lotia, Joshua Orvis, Prachi Shah, Marek S. Skrzypek, Gail Binkley, Stuart R. Miyasato, Jennifer R. Wortman, Gavin Sherlock

Nucleic Acids Res., 2010

Ergatis: a web interface and scalable software system for bioinformatics workflows.

Joshua Orvis, Jonathan Crabtree, Kevin Galens, Aaron Gussman, Jason M. Inman, Eduardo Lee, Sreenath Nampally, David R. Riley, Jaideep P. Sundaram, Victor Felix, Brett Whitty, Anup Mahurkar, Jennifer R. Wortman, Owen White, Samuel V. Angiuoli

Bioinform., 2010

2007

The TIGR Rice Genome Annotation Resource: improvements and new features.

Shu Ouyang, Wei Zhu, John A. Hamilton Jr., Haining Lin, Matthew Campbell, Kevin L. Childs, Françoise Thibaud-Nissen, Renae L. Malek, Yuandan Lee, Li Zheng, Joshua Orvis, Brian Haas, Jennifer R. Wortman, C. Robin Buell

Nucleic Acids Res., 2007