Jonathan Crabtree

According to our database, Jonathan Crabtree authored at least 28 papers between 1993 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain.

Seth A. Ament, Ricky S. Adkins, Robert Carter, Elena Chrysostomou, Carlo Colantuoni, Jonathan Crabtree, Heather Huot Creasy, Kylee Degatano, Victor Felix, Peter Gandt, Gwenn a Garden, Michelle G. Giglio, Brian R. Herb, Farzaneh Khajouei, Elizabeth Kiernan, Carrie McCracken, Kennedy McDaniel, Suvarna Nadendla, Lance Nickel, Dustin Olley, Joshua Orvis, Joseph P. Receveur, Mike Schor, Shreyash Sonthalia, Timothy L. Tickle, Jessica Way, Ronna Hertzano, Anup A. Mahurkar, Owen R. White

Nucleic Acids Res., January, 2023

Contextual in situ help for visual data interfaces.

Pramod Chundury, Mehmet Adil Yalçin, Jonathan Crabtree, Anup Mahurkar, Lisa M. Shulman, Niklas Elmqvist

Inf. Vis., 2023

2021

HMPDACC: a Human Microbiome Project Multi-omic data resource.

Heather Huot Creasy, Victor Felix, Jain Aluvathingal, Jonathan Crabtree, Olukemi O. Ifeonu, James Matsumura, Carrie McCracken, Lance Nickel, Joshua Orvis, Mike Schor, Michelle G. Giglio, Anup Mahurkar, Owen White

Nucleic Acids Res., 2021

2014

Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG.

Jonathan Crabtree, Sonia Agrawal, Anup Mahurkar, Garry S. A. Myers, David A. Rasko, Owen White

Bioinform., 2014

2013

Expansion of the Odum Institute Dataverse Network: Forming Partnerships, Harnessing Infrastructures, and increasing Preservation of Research Data.

Jonathan Crabtree, Lynda Kellam

Proceedings of the IASSIST 2013, 2013

DataBridge: Building an E-science Collaboration Environment Tool for Linking Diverse Datasets into a Socio-metric Network.

Jonathan Crabtree

Proceedings of the IASSIST 2013, 2013

2012

The <i>Aspergillus</i> Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.

Martha B. Arnaud, Gustavo C. Cerqueira, Diane O. Inglis, Marek S. Skrzypek, Jonathan Binkley, Marcus C. Chibucos, Jonathan Crabtree, Clinton Howarth, Joshua Orvis, Prachi Shah, Farrell Wymore, Gail Binkley, Stuart R. Miyasato, Matt Simison, Gavin Sherlock, Jennifer R. Wortman

Nucleic Acids Res., 2012

Using Sybil for interactive comparative genomics of microbes on the web.

David R. Riley, Samuel V. Angiuoli, Jonathan Crabtree, Julie C. Dunning Hotopp, Hervé Tettelin

Bioinform., 2012

2011

Virtual Archiving for Public Opinion Polls.

Jonathan Crabtree

Proceedings of the 8th International Conference on Digital Preservation, 2011

2010

Pathema: a clade-specific bioinformatics resource center for pathogen research.

Lauren M. Brinkac, Tanja Davidsen, Erin Beck, Anuradha Ganapathy, Elisabet Caler, Robert J. Dodson, A. Scott Durkin, Derek M. Harkins, Hernan Lorenzi, Ramana Madupu, Yinong Sebastian, Susmita Shrivastava, Mathangi Thiagarajan, Joshua Orvis, Jaideep P. Sundaram, Jonathan Crabtree, Kevin Galens, Yongmei Zhao, Jason M. Inman, Robert Montgomery, Seth Schobel, Kevin Galinsky, David M. Tanenbaum, Adam Resnick, Nikhat Zafar, Owen White, Granger G. Sutton

Nucleic Acids Res., 2010

The <i>Aspergillus</i> Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the <i>Aspergillus</i> research community.

Martha B. Arnaud, Marcus C. Chibucos, Maria C. Costanzo, Jonathan Crabtree, Diane O. Inglis, Adil Lotia, Joshua Orvis, Prachi Shah, Marek S. Skrzypek, Gail Binkley, Stuart R. Miyasato, Jennifer R. Wortman, Gavin Sherlock

Nucleic Acids Res., 2010

Ergatis: a web interface and scalable software system for bioinformatics workflows.

Joshua Orvis, Jonathan Crabtree, Kevin Galens, Aaron Gussman, Jason M. Inman, Eduardo Lee, Sreenath Nampally, David R. Riley, Jaideep P. Sundaram, Victor Felix, Brett Whitty, Anup Mahurkar, Jennifer R. Wortman, Owen White, Samuel V. Angiuoli

Bioinform., 2010

Automated DDI Metadata Harvesting and Replication for Preservation Purposes within iRODS.

Jonathan Crabtree, Antoine de Torcy, Mason Chua

Proceedings of the IASSIST 2010, 2010

2009

The HuRef Browser: a web resource for individual human genomics.

Nelson Axelrod, Yuan Lin, Pauline C. Ng, Timothy B. Stockwell, Jonathan Crabtree, Jiaqi Huang, Ewen Kirkness, Robert Strausberg, Marvin Frazier, J. Craig Venter, Saul Kravitz, Samuel Levy

Nucleic Acids Res., 2009

Extracting and Ingesting DDI Metadata and Digital Objects from a Data Archive into the iRODS Extension of the NARA TPAP Using the OAI-PMH.

Jewel H. Ward, Antoine de Torcy, Mason Chua, Jonathan Crabtree

Proceedings of the Fifth International Conference on e-Science, 2009

2008

IDEA: Interactive Display for Evolutionary Analyses.

Amy Egan, Anup Mahurkar, Jonathan Crabtree, Jonathan H. Badger, Jane M. Carlton, Joana C. Silva

BMC Bioinform., 2008

Integrating ddi metadata into the nara transcontinental persistent archive prototype via the oai-pmh.

Jewel H. Ward, Jonathan Crabtree

Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2008

2004

ApiEST-DB: analyzing clustered EST data of the apicomplexan parasites.

Li Li, Jonathan Crabtree, Steve Fischer, Deborah F. Pinney, Christian J. Stoeckert Jr., L. David Sibley, David S. Roos

Nucleic Acids Res., 2004

2003

PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data.

Amit Bahl, Brian P. Brunk, Jonathan Crabtree, Martin J. Fraunholz, Bindu Gajria, Gregory R. Grant, Hagai Ginsburg, Dinesh Gupta, Jessica C. Kissinger, Philip Labo, Li Li, Matthew D. Mailman, Arthur J. Milgram, David S. Pearson, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr., Patricia L. Whetzel

Nucleic Acids Res., 2003

2002

PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished).

Amit Bahl, Brian P. Brunk, Ross L. Coppel, Jonathan Crabtree, Sharon J. Diskin, Martin J. Fraunholz, Gregory R. Grant, Dinesh Gupta, Robert L. Huestis, Jessica C. Kissinger, Philip Labo, Li Li, Shannon K. McWeeney, Arthur J. Milgram, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr.

Nucleic Acids Res., 2002

2001

K2/Kleisli and GUS: Experiments in integrated access to genomic data sources.

Susan B. Davidson, Jonathan Crabtree, Brian P. Brunk, Jonathan Schug, Val Tannen, G. Christian Overton, Christian J. Stoeckert Jr.

IBM Syst. J., 2001

A relational schema for both array-based and SAGE gene expression experiments.

Christian J. Stoeckert Jr., Angel D. Pizarro, Elisabetta Manduchi, M. Gibson, Brian P. Brunk, Jonathan Crabtree, Jonathan Schug, Shai Shen-Orr, G. Christian Overton

Bioinform., 2001

1999

bioWidgets: data interaction components for genomics.

Steve Fischer, Jonathan Crabtree, Brian P. Brunk, M. Gibson, G. Christian Overton

Bioinform., 1999

1995

Production and Playback of Human Figure Motion for Visual Simulation.

John P. Granieri, Jonathan Crabtree, Norman I. Badler

ACM Trans. Model. Comput. Simul., 1995

Production and playback of human figure motion for 3D virtual environments.

John P. Granieri, Jonathan Crabtree, Norman I. Badler

Proceedings of the 1995 Virtual Reality Annual International Symposium, 1995

Behavioral Control for Real-Time Simulated Human Agents.

John P. Granieri, Welton Becket, Barry D. Reich, Jonathan Crabtree, Norman I. Badler

Proceedings of the 1995 Symposium on Interactive 3D Graphics, 1995

1993

Safe and Decidable Type Checking in an Object-Oriented Language.

Kim B. Bruce, Jonathan Crabtree, Thomas P. Murtagh, Robert van Gent, Allyn Dimock, Robert Muller

Proceedings of the Eighth Annual Conference on Object-Oriented Programming Systems, 1993

An Operational Semantics for TOOPLE: A Statically-Typed Object-Oriented Programming Language.

Kim B. Bruce, Jonathan Crabtree, Gerlad Kanapathy

Proceedings of the Mathematical Foundations of Programming Semantics, 1993