Karsten Suhre

Orcid: 0000-0001-9638-3912

Affiliations:
  • Weill Cornell Medicine, Qatar


According to our database1, Karsten Suhre authored at least 26 papers between 2003 and 2022.

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Bibliography

2022
maplet: an extensible R toolbox for modular and reproducible metabolomics pipelines.
Bioinform., 2022

SGI: automatic clinical subgroup identification in omics datasets.
Bioinform., 2022

TIGER: technical variation elimination for metabolomics data using ensemble learning architecture.
Briefings Bioinform., 2022

2021
Robust Huber-LASSO for improved prediction of protein, metabolite and gene expression levels relying on individual genotype data.
Briefings Bioinform., 2021

2019
MoDentify: phenotype-driven module identification in metabolomics networks at different resolutions.
Bioinform., 2019

2018
Genomic atlas of the human plasma proteome.
Nat., 2018

2017
pulver: an R package for parallel ultra-rapid p-value computation for linear regression interaction terms.
BMC Bioinform., 2017

2016
A graph based method for depicting population characteristics using Genome Wide Data.
J. Comput. Sci., 2016

2015
<i>SNiPA</i>: an interactive, genetic variant-centered annotation browser.
Bioinform., 2015

2014
On the potential of models for location and scale for genome-wide DNA methylation data.
BMC Bioinform., 2014

2013
MetFlexo: An Automated Simulation of Realistic H<sup>1</sup>-NMR Spectra.
Proceedings of the International Conference on Computational Science, 2013

2012
On the hypothesis-free testing of metabolite ratios in genome-wide and metabolome-wide association studies.
BMC Bioinform., 2012

2011
MIPS: curated databases and comprehensive secondary data resources in 2010.
Nucleic Acids Res., 2011

Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data.
BMC Syst. Biol., 2011

2008
MassTRIX: mass translator into pathways.
Nucleic Acids Res., 2008

2006
GFscore: A General Nonlinear Consensus Scoring Function for High-Throughput Docking.
J. Chem. Inf. Model., 2006

Determination of strongly overlapping signaling activity from microarray data.
BMC Bioinform., 2006

2005
Phydbac "Gene Function Predictor" : a gene annotation tool based on genomic context analysis.
BMC Bioinform., 2005

2004
ElNémo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement.
Nucleic Acids Res., 2004

FusionDB: a database for in-depth analysis of prokaryotic gene fusion events.
Nucleic Acids Res., 2004

3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment.
Nucleic Acids Res., 2004

Phydbac2: improved inference of gene function using interactive phylogenomic profiling and chromosomal location analysis.
Nucleic Acids Res., 2004

CaspR: a web server for automated molecular replacement using homology modelling.
Nucleic Acids Res., 2004

2003
Phydbac (phylogenomic display of bacterial genes): an interactive resource for the annotation of bacterial genomes.
Nucleic Acids Res., 2003

Annotation of bacterial genomes using improved phylogenomic profiles.
Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

Analysis of Phylogenetic Profiles Using Bayesian Decomposition.
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003


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