Thomas Rattei

According to our database1, Thomas Rattei authored at least 27 papers between 2005 and 2021.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
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Links

Online presence:

On csauthors.net:

Bibliography

2021
DeepNOG: fast and accurate protein orthologous group assignment.
Bioinform., 2021

2020
scikit-hubness: Hubness Reduction and Approximate Neighbor Search.
J. Open Source Softw., 2020

2019
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses.
Nucleic Acids Res., 2019

2016
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences.
Nucleic Acids Res., 2016

probeBase - an online resource for rRNA-targeted oligonucleotide probes and primers: new features 2016.
Nucleic Acids Res., 2016

EffectiveDB - updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
Nucleic Acids Res., 2016

ConsPred: a rule-based (re-)annotation framework for prokaryotic genomes.
Bioinform., 2016

NVT: a fast and simple tool for the assessment of RNA-seq normalization strategies.
Bioinform., 2016

2014
eggNOG v4.0: nested orthology inference across 3686 organisms.
Nucleic Acids Res., 2014

SIMAP - the database of all-against-all protein sequence similarities and annotations with new interfaces and increased coverage.
Nucleic Acids Res., 2014

Challenges in RNA virus bioinformatics.
Bioinform., 2014

2012
eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges.
Nucleic Acids Res., 2012

2011
MIPS: curated databases and comprehensive secondary data resources in 2010.
Nucleic Acids Res., 2011

Effective - a database of predicted secreted bacterial proteins.
Nucleic Acids Res., 2011

B2G-FAR, a species-centered GO annotation repository.
Bioinform., 2011

2010
The Negatome database: a reference set of non-interacting protein pairs.
Nucleic Acids Res., 2010

SIMAP - a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters.
Nucleic Acids Res., 2010

2009
PEDANT covers all complete RefSeq genomes.
Nucleic Acids Res., 2009

2008
SIMAP - structuring the network of protein similarities.
Nucleic Acids Res., 2008

MIPS: analysis and annotation of genome information in 2007.
Nucleic Acids Res., 2008

Beyond the "best" match: machine learning annotation of protein sequences by integration of different sources of information.
Bioinform., 2008

2007
Gepard: a rapid and sensitive tool for creating dotplots on genome scale.
Bioinform., 2007

2006
The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context.
Nucleic Acids Res., 2006

SIMAP: the similarity matrix of proteins.
Nucleic Acids Res., 2006

MIPS: analysis and annotation of proteins from whole genomes in 2005.
Nucleic Acids Res., 2006

Using Public Resource Computing and Systematic Pre-calculation for Large Scale Sequence Analysis.
Proceedings of the Distributed, 2006

2005
SIMAP - The similarity matrix of proteins.
Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005


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