Kay C. Wiese
Orcid: 0000-0003-4507-1892Affiliations:
- Simon Fraser University, Burnaby, Canada
According to our database1,
Kay C. Wiese
authored at least 64 papers
between 1998 and 2023.
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Bibliography
2023
A Comparison of Machine Learning Models for Predicting CRISPR/Cas On-target Efficacy.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2023
Proceedings of the 36th Canadian Conference on Artificial Intelligence, 2023
2022
Bioinform., 2022
EvoDNN - Evolving Weights, Biases, and Activation Functions in a Deep Neural Network.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2022
2019
EvoDNN - An Evolutionary Deep Neural Network with Heterogeneous Activation Functions.
Proceedings of the IEEE Congress on Evolutionary Computation, 2019
2018
EvoNN: a customizable evolutionary neural network with heterogenous activation functions.
Proceedings of the Genetic and Evolutionary Computation Conference Companion, 2018
2017
RNA Visualization: Relevance and the Current State-of-the-Art Focusing on Pseudoknots.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017
Numerical integration methods and layout improvements in the context of dynamic RNA visualization.
BMC Bioinform., 2017
2015
A study of different annealing schedules in SARNA-predict: A permutation based SA algorithm for RNA folding.
Int. J. Intell. Comput. Cybern., 2015
Diploidy in evolutionary algorithms for dynamic optimization problems: A best-chromosome-wins dominance mechanism.
Int. J. Intell. Comput. Cybern., 2015
A permutation based simulated annealing algorithm to predict pseudoknotted RNA secondary structures.
Int. J. Bioinform. Res. Appl., 2015
2013
pEvoSAT: a novel permutation based genetic algorithm for solving the boolean satisfiability problem.
Proceedings of the Genetic and Evolutionary Computation Conference, 2013
2012
Improving the Portability and Performance of jViz.RNA - A Dynamic RNA Visualization Software.
Proceedings of the Pattern Recognition in Bioinformatics, 2012
Proceedings of the 2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2012
2011
Proceedings of the 2011 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2011
Proceedings of the 2011 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2011
Improving splice-junctions classification employing a novel encoding schema and decision-tree.
Proceedings of the IEEE Congress on Evolutionary Computation, 2011
2010
SARNA-Predict: Accuracy Improvement of RNA Secondary Structure Prediction Using Permutation-Based Simulated Annealing.
IEEE ACM Trans. Comput. Biol. Bioinform., 2010
Expanded study of efn2 thermodynamic model performance on RnaPredict, an evolutionary algorithm for RNA folding.
Proceedings of the 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2010
Proceedings of the 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2010
Proceedings of the IEEE Congress on Evolutionary Computation, 2010
2009
SARNA-ensemble-predict: The effect of different dissimilarity metrics on a novel ensemble-based RNA secondary structure prediction algorithm.
Proceedings of the 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2009
Performance prediction for RNA design using parametric and non-parametric regression models.
Proceedings of the 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2009
Proceedings of the 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2009
Impact of an enhanced thermodynamic model on RnaPredict, an evolutionary algorithm for RNA secondary structure prediction.
Proceedings of the IEEE Congress on Evolutionary Computation, 2009
Proceedings of the IEEE Congress on Evolutionary Computation, 2009
2008
Proceedings of the Computational Intelligence in Biomedicine and Bioinformatics, 2008
Integrating Thermodynamic and Observed-Frequency Data for Non-coding RNA Gene Search.
Trans. Comp. Sys. Biology, 2008
IEEE ACM Trans. Comput. Biol. Bioinform., 2008
Proceedings of the 2008 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2008
Proceedings of the 2008 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2008
2007
IEEE Comput. Intell. Mag., 2007
SARNA-Predict: A Study of RNA Secondary Structure Prediction Using Different Annealing Schedules.
Proceedings of the 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2007
The significance of thermodynamic models in the accuracy improvement of RNA secondary structure prediction using permutation-based simulated annealing.
Proceedings of the IEEE Congress on Evolutionary Computation, 2007
Proceedings of the 2nd International ICST Conference on Bio-Inspired Models of Network, 2007
2006
<i>Ebbie</i>: automated analysis and storage of small RNA cloning data using a dynamic web server.
BMC Bioinform., 2006
Comparison of <i>P-RnaPredict</i> and <i>mfold</i> - algorithms for RNA secondary structure prediction.
Bioinform., 2006
Analysis of Thermodynamic Models and Performance in RnaPredict - An Evolutionary Algorithm for RNA Folding.
Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006
SARNA-Predict: A Simulated Annealing Algorithm for RNA Secondary Structure Prediction.
Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006
A Detailed Analysis of Parallel Speedup in P-RnaPredict - An Evolutionary Algorithm for RNA Secondary Structure Prediction.
Proceedings of the IEEE International Conference on Evolutionary Computation, 2006
jViz.Rna - An Interactive Graphical Tool for Visualizing RNA Secondary Structure Including Pseudoknots.
Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006
Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006
2005
The impact of pseudorandom number quality on <i>P-RnaPredict</i>, a parallel genetic algorithm for RNA secondary structure prediction.
Proceedings of the Genetic and Evolutionary Computation Conference, 2005
Algorithms for RNA folding: a comparison of dynamic programming and parallel evolutionary algorithms.
Proceedings of the IEEE Congress on Evolutionary Computation, 2005
Significance of randomness in P-RnaPredict - a parallel evolutionary algorithm for RNA folding.
Proceedings of the IEEE Congress on Evolutionary Computation, 2005
2004
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004
A parallel evolutionary algorithm for RNA secondary structure prediction using stacking-energies (INN and INN-HB).
Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2004
Comparison of dynamic programming and evolutionary algorithms for RNA secondary structure prediction.
Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2004
Using stacking-energies (INN and INN-HB) for improving the accuracy of RNA secondary structure prediction with an evolutionary algorithm - a comparison to known structures.
Proceedings of the IEEE Congress on Evolutionary Computation, 2004
Proceedings of the Advances in Artificial Intelligence, 2004
Comparison of Parallel and Serial Genetic Algorithms for RNA Secondary Structure Prediction.
Proceedings of the Advances in Artificial Intelligence, 2004
Comparison of Permutation-Based and Binary Representation in a Genetic Algorithm for RNA Secondary Structure Prediction.
Proceedings of the Advances in Artificial Intelligence, 2004
2003
RNA Structure as Permutation: A GA Approach Comparing Different Genetic Sequencing Operators.
Proceedings of the Foundations of Intelligent Systems, 14th International Symposium, 2003
Proceedings of the IEEE Congress on Evolutionary Computation, 2003
Proceedings of the IEEE Congress on Evolutionary Computation, 2003
2002
A Permutation Based Genetic Algorithm for RNA Secondary Structure Prediction.
Proceedings of the Soft Computing Systems - Design, Management and Applications, 2002
2001
Keep-Best Reproduction: A Local Family Competition Selection Strategy and the Environment it Flourishes in.
Constraints An Int. J., 2001
2000
Proceedings of the Advances in Artificial Intelligence, 2000
1999
Proceedings of the 1999 ACM Symposium on Applied Computing, 1999
1998
Proceedings of the 1998 ACM symposium on Applied Computing, 1998
Proceedings of the Eleventh International Florida Artificial Intelligence Research Society Conference, 1998
The Effect of Genetic Operator Probabilities and Selection Strategies on the Performance of a Genetic Algorithm.
Proceedings of the Advances in Artificial Intelligence, 1998