Kay Hamacher

Orcid: 0000-0002-6921-8345

Affiliations:
  • Darmstadt University of Technology, Germany


According to our database1, Kay Hamacher authored at least 65 papers between 2006 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
Anisotropic Network Analysis of Open/Closed HCN4 Channel Advocates Asymmetric Subunit Cooperativity in cAMP Modulation of Gating.
J. Chem. Inf. Model., 2024

2023
Biotite: new tools for a versatile Python bioinformatics library.
BMC Bioinform., December, 2023

2022
SPIKE: secure and private investigation of the kidney exchange problem.
BMC Medical Informatics Decis. Mak., 2022

PEA: Practical private epistasis analysis using MPC.
IACR Cryptol. ePrint Arch., 2022

Consistent Quantification of Complex Dynamics via a Novel Statistical Complexity Measure.
Entropy, 2022

Fallzahlen, Re-Identifikation und der technische Datenschutz.
Datenschutz und Datensicherheit, 2022

EasySMPC: a simple but powerful no-code tool for practical secure multiparty computation.
BMC Bioinform., 2022

Mainzelliste SecureEpiLinker (MainSEL): privacy-preserving record linkage using secure multi-party computation.
Bioinform., 2022

Adding hydrogen atoms to molecular models via fragment superimposition.
Algorithms Mol. Biol., 2022

Secure Multi-Party Computation Based Distributed Feasibility Queries - A HiGHmed Use Case.
Proceedings of the German Medical Data Sciences 2022 - Future Medicine: More Precise, More Integrative, More Sustainable! - Proceedings of the Joint Conference of the 67th Annual Meeting of the German Association of Medical Informatics, Biometry, and Epidemiology e.V. (gmds) and the 14th Annual Meeting of the TMF, 2022

2021
Genetic algorithm niching by (Quasi-)infinite memory.
Proceedings of the GECCO '21: Genetic and Evolutionary Computation Conference, 2021

2020
SICOR: Subgraph Isomorphism Comparison of RNA Secondary Structures.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020

Genomische Daten und der Datenschutz.
Datenschutz und Datensicherheit, 2020

Substitution matrix based color schemes for sequence alignment visualization.
BMC Bioinform., 2020

2019
Long-term integrity protection of genomic data.
EURASIP J. Inf. Secur., 2019

Hybridization of Stochastic Tunneling with (Quasi)-Infinite Time-Horizon Tabu Search.
Proceedings of the Hybrid Metaheuristics - 11th International Workshop, 2019

2018
StreaMD: Advanced analysis of molecular dynamics using R.
J. Comput. Chem., 2018

hoDCA: higher order direct-coupling analysis.
BMC Bioinform., 2018

Biotite: a unifying open source computational biology framework in Python.
BMC Bioinform., 2018

Large-Scale Privacy-Preserving Statistical Computations for Distributed Genome-Wide Association Studies.
Proceedings of the 2018 on Asia Conference on Computer and Communications Security, 2018

2017
Cleavage Product Accumulation Decreases the Activity of Cutinase during PET Hydrolysis.
J. Chem. Inf. Model., 2017

PFASUM: a substitution matrix from Pfam structural alignments.
BMC Bioinform., 2017

StreAM-T<sub>g</sub>: algorithms for analyzing coarse grained RNA dynamics based on Markov models of connectivity-graphs.
Algorithms Mol. Biol., 2017

TransferEntropyPT: An R Package to Assess Transfer Entropies via Permutation Tests.
Proceedings of the Computational Methods in Systems Biology, 2017

Privacy-Preserving Whole-Genome Variant Queries.
Proceedings of the Cryptology and Network Security - 16th International Conference, 2017

2016
Addressing inaccuracies in BLOSUM computation improves homology search performance.
BMC Bioinform., 2016

StreAM- T_g : Algorithms for Analyzing Coarse Grained RNA Dynamics Based on Markov Models of Connectivity-Graphs.
Proceedings of the Algorithms in Bioinformatics - 16th International Workshop, 2016

Visual Analysis and Comparison of Multiple Sequence Alignments.
Proceedings of the 6th Eurographics Workshop on Visual Computing for Biology and Medicine, 2016

Correcting Finite Sampling Issues in Entropy l-diversity.
Proceedings of the Privacy in Statistical Databases, 2016

Evolving Smoothing Kernels for Global Optimization.
Proceedings of the Applications of Evolutionary Computation - 19th European Conference, 2016

Using Lisp Macro-Facilities for Transferable Statistical Tests.
Proceedings of the 9th European Lisp Symposium (ELS 2016), Kraków, Poland, May 9-10, 2016., 2016

2015
DOCKTITE - A Highly Versatile Step-by-Step Workflow for Covalent Docking and Virtual Screening in the Molecular Operating Environment.
J. Chem. Inf. Model., 2015

StreaM - A Stream-Based Algorithm for Counting Motifs in Dynamic Graphs.
Proceedings of the Algorithms for Computational Biology, 2015

2014
Using graphics processing units to investigate molecular coevolution.
Concurr. Comput. Pract. Exp., 2014

Visual Exploration of Parameter Influence on Phylogenetic Trees.
IEEE Computer Graphics and Applications, 2014

Privacy-Preserving Whole Genome Sequence Processing through Proxy-Aided ORAM.
Proceedings of the 13th Workshop on Privacy in the Electronic Society, 2014

Visual analysis of patterns in multiple amino acid mutation graphs.
Proceedings of the 9th IEEE Conference on Visual Analytics Science and Technology, 2014

Online Performance Measures for Metaheuristic Optimization.
Proceedings of the Hybrid Metaheuristics - 9th International Workshop, HM 2014, 2014

R as an Integration Tool in High Performance Computing - Lessons Learned.
Proceedings of the 44. Jahrestagung der Gesellschaft für Informatik, Big Data, 2014

Stochastic tunneling transformation during selection in genetic algorithm.
Proceedings of the Genetic and Evolutionary Computation Conference, 2014

Serious Games for Solving Protein Sequence Alignments - Combining Citizen Science and Gaming.
Proceedings of the Games for Training, Education, Health and Sports, 2014

2013
Distance dependency and minimum amino acid alphabets for decoy scoring potentials.
J. Comput. Chem., 2013

Secure computations on non-integer values with applications to privacy-preserving sequence analysis.
Inf. Secur. Tech. Rep., 2013

Structure and Anonymity of the Bitcoin Transaction Graph.
Future Internet, 2013

Genomic Privacy (Dagstuhl Seminar 13412).
Dagstuhl Reports, 2013

A New Hybrid Metaheuristic - Combining Stochastic Tunneling and Energy Landscape Paving.
Proceedings of the Hybrid Metaheuristics - 8th International Workshop, 2013

2011
Efficient quantification of the importance of contacts for the dynamical stability of proteins.
J. Comput. Chem., 2011

Is Your Permutation Algorithm Unbiased for n ≠ 2 m ?
Proceedings of the Parallel Processing and Applied Mathematics, 2011

Public security: simulations need to replace conventional wisdom.
Proceedings of the 2011 New Security Paradigms Workshop, 2011

Interactive visual comparison of multiple trees.
Proceedings of the 6th IEEE Conference on Visual Analytics Science and Technology, 2011

Towards Secure Bioinformatics Services (Short Paper).
Proceedings of the Financial Cryptography and Data Security, 2011

2010
Efficient perturbation analysis of elastic network models - Application to acetylcholinesterase of T. californica.
J. Comput. Phys., 2010

Secure Computations on Non-Integer Values.
IACR Cryptol. ePrint Arch., 2010

Computation of mutual information from Hidden Markov Models.
Comput. Biol. Chem., 2010

BioPhysConnectoR: Connecting Sequence Information and Biophysical Models.
BMC Bioinform., 2010

Computing and visually analyzing mutual information in molecular co-evolution.
BMC Bioinform., 2010

Protein Domain Phylogenies - Information Theory and Evolutionary Dynamics.
Proceedings of the BIOINFORMATICS 2010, 2010

Intra- and Inter-Molecular Coevolution: The Case of HIV1 Protease and Reverse Transcriptase.
Proceedings of the Biomedical Engineering Systems and Technologies, 2010

Co-evolution in HIV Enzymes.
Proceedings of the BIOINFORMATICS 2010, 2010

2009
Estimating sufficient statistics in co-evolutionary analysis by mutual information.
Comput. Biol. Chem., 2009

Vorwort zum Workshop "Massively parallel computational biology on GPUs".
Proceedings of the 39. Jahrestagung der Gesellschaft für Informatik, Im Focus das Leben, INFORMATIK 2009, Lübeck, Germany, September 28, 2009

Massively-Parallel Simulation of Biochemical Systems.
Proceedings of the 39. Jahrestagung der Gesellschaft für Informatik, Im Focus das Leben, INFORMATIK 2009, Lübeck, Germany, September 28, 2009

2007
Adaptive extremal optimization by detrended fluctuation analysis.
J. Comput. Phys., 2007

Information theoretical measures to analyze trajectories in rational molecular design.
J. Comput. Chem., 2007

2006
Dependency Map of Proteins in the Small Ribosomal Subunit.
PLoS Comput. Biol., 2006


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