Kenneth M. Merz Jr.

Orcid: 0000-0001-9139-5893

According to our database1, Kenneth M. Merz Jr. authored at least 60 papers between 1993 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Dataset
Other 

Links

Online presence:

On csauthors.net:

Bibliography

2024
In Memoriam: Dr. George W. A. Milne.
J. Chem. Inf. Model., January, 2024

Molecular Gas-Phase Conformational Ensembles.
J. Chem. Inf. Model., 2024

2023
Modeling Reactions from Chemical Theories to Machine Learning.
J. Chem. Inf. Model., December, 2023

AlphaFold2 in Molecular Discovery.
J. Chem. Inf. Model., October, 2023

AmberTools.
J. Chem. Inf. Model., October, 2023

Editorial: Harnessing the Power of Large Language Model-Based Chatbots for Scientific Discovery.
J. Chem. Inf. Model., September, 2023

Rapid and Automated <i>Ab Initio</i> Metabolite Collisional Cross Section Prediction from SMILES Input.
J. Chem. Inf. Model., August, 2023

Guidelines for Reporting Molecular Dynamics Simulations in JCIM Publications.
J. Chem. Inf. Model., June, 2023

Quantum Mechanics/Molecular Mechanics Simulations on NVIDIA and AMD Graphics Processing Units.
J. Chem. Inf. Model., February, 2023

Editorial: Machine Learning in Bio-cheminformatics.
J. Chem. Inf. Model., 2023

End-to-End Differentiable Reactive Molecular Dynamics Simulations Using JAX.
Proceedings of the High Performance Computing - 38th International Conference, 2023

2022
Editorial on Machine Learning.
J. Chem. Inf. Model., 2022

The (Re)-Evolution of Quantitative Structure-Activity Relationship (QSAR) Studies Propelled by the Surge of Machine Learning Methods.
J. Chem. Inf. Model., 2022

Effect of an Inhibitor on the ACE2-Receptor-Binding Domain of SARS-CoV-2.
J. Chem. Inf. Model., 2022

2021
AutoGraph: Autonomous Graph-Based Clustering of Small-Molecule Conformations.
J. Chem. Inf. Model., 2021

Parameterization of Monovalent Ions for the OPC3, OPC, TIP3P-FB, and TIP4P-FB Water Models.
J. Chem. Inf. Model., 2021

Correction to "Parameterization of Monovalent Ions for the OPC3, OPC, TIP3P-FB, and TIP4P-FB Water Models".
J. Chem. Inf. Model., 2021

Open-Source Multi-GPU-Accelerated QM/MM Simulations with AMBER and QUICK.
J. Chem. Inf. Model., 2021

2020
Converging Interests: Chemoinformatics, History, and Bibliometrics.
J. Chem. Inf. Model., 2020

Validation of Free Energy Methods in AMBER.
J. Chem. Inf. Model., 2020

Evolution of Alchemical Free Energy Methods in Drug Discovery.
J. Chem. Inf. Model., 2020

MRP.py: A Parametrizer of Post-Translationally Modified Residues.
J. Chem. Inf. Model., 2020

What Makes a Paper Be Highly Cited? 60 Years of the Journal of Chemical Information and Modeling.
J. Chem. Inf. Model., 2020

Generative Models for Molecular Design.
J. Chem. Inf. Model., 2020

JCIM Special Issue on Generative Models for Molecular Design.
J. Chem. Inf. Model., 2020

Editorial: Method and Data Sharing and Reproducibility of Scientific Results.
J. Chem. Inf. Model., 2020

Impact of the Journal of Chemical Information and Modeling Special Issue on Women in Computational Chemistry.
J. Chem. Inf. Model., 2020

Update to Our Reader, Reviewer, and Author Communities - April 2020.
J. Chem. Inf. Model., 2020

Confronting Racism in Chemistry Journals.
J. Chem. Inf. Model., 2020

2019
Using AMBER18 for Relative Free Energy Calculations.
J. Chem. Inf. Model., 2019

Random Forest Refinement of the KECSA2 Knowledge-Based Scoring Function for Protein Decoy Detection.
J. Chem. Inf. Model., 2019

Random Forest Refinement of Pairwise Potentials for Protein-Ligand Decoy Detection.
J. Chem. Inf. Model., 2019

2018
Investing in the Future.
J. Chem. Inf. Model., 2018

Detailed potential of mean force studies on host-guest systems from the SAMPL6 challenge.
J. Comput. Aided Mol. Des., 2018

2017
The Ecstasy and Agony of Assay Interference Compounds.
J. Chem. Inf. Model., 2017

On the fly estimation of host-guest binding free energies using the movable type method: participation in the SAMPL5 blind challenge.
J. Comput. Aided Mol. Des., 2017

2016
MCPB.py: A Python Based Metal Center Parameter Builder.
J. Chem. Inf. Model., 2016

2015
Letter from the Editors.
J. Chem. Inf. Model., 2015

Introducing the Review Manuscript Type.
J. Chem. Inf. Model., 2015

Reduction of Urease Activity by Interaction with the Flap Covering the Active Site.
J. Chem. Inf. Model., 2015

2014
New Manuscript Type: Application Note.
J. Chem. Inf. Model., 2014

2013
Development of the Knowledge-Based and Empirical Combined Scoring Algorithm (KECSA) To Score Protein-Ligand Interactions.
J. Chem. Inf. Model., 2013

2012
Comment on "a minimal implementation of the AMBER-GAUSSIAN interface for <i>Ab Initio</i> QM/MM-MD simulation".
J. Comput. Chem., 2012

QM/MM refinement and analysis of protein bound retinoic acid.
J. Comput. Chem., 2012

Prediction of trypsin/molecular fragment binding affinities by free energy decomposition and empirical scores.
J. Comput. Aided Mol. Des., 2012

2011
Ligand Identification Scoring Algorithm (LISA).
J. Chem. Inf. Model., 2011

Accurate assessment of the strain energy in a protein-bound drug using QM/MM X-ray refinement and converged quantum chemistry.
J. Comput. Chem., 2011

2006
Quantum mechanical and molecular dynamics simulations of ureases and Zn beta-lactamases.
J. Comput. Chem., 2006

2005
QMQSAR: Utilization of a semiempirical probe potential in a field-based QSAR method.
J. Comput. Chem., 2005

The Amber biomolecular simulation programs.
J. Comput. Chem., 2005

2004
PM3-compatible zinc parameters optimized for metalloenzyme active sites.
J. Comput. Chem., 2004

2002
Molecular dynamics simulations of the dinuclear zinc--lactamase from Bacteroides fragilis complexed with imipenem.
J. Comput. Chem., 2002

Computation of the physio-chemical properties and data mining of large molecular collections.
J. Comput. Chem., 2002

Can we separate active from inactive conformations?
J. Comput. Aided Mol. Des., 2002

2000
Linear scaling molecular orbital calculations of biological systems using the semiempirical divide and conquer method.
J. Comput. Chem., 2000

1995
A Highly Portable Parallel Implementation of AMBER4 Using the Message Passing Interface Standart.
J. Comput. Chem., 1995

An Examination of a Density Functional/Molecular Mechanical Coupled Potential.
J. Comput. Chem., 1995

1994
A Force Field for Monosaccharides and (1->4) Linked Polysaccharides.
J. Comput. Chem., 1994

1993
The application of the genetic algorithm to the minimization of potential energy functions.
J. Glob. Optim., 1993

Rapid approximation to molecular surface area via the use of Boolean logic and look-up tables.
J. Comput. Chem., 1993


  Loading...