Negin Forouzesh

According to our database, Negin Forouzesh authored at least 14 papers between 2014 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Multi-Objective Loss Function For Free Energy Calculations.

Libina Bovan Thomas, Ali Risheh, Negin Forouzesh

Proceedings of the 16th ACM International Conference on Bioinformatics, 2025

Physics-Guided Active Learning for New Ligand Discovery.

Nikhil Dhiman, Dikshant Sagar, Negin Forouzesh

Proceedings of the Companion Proceedings of the 16th ACM International Conference on Bioinformatics, 2025

2024

Molecular Docking Improved with Human Spatial Perception Using Virtual Reality.

Shivam Mishra, Missael Corro-Flores, David Krum, Negin Forouzesh

IEEE Trans. Vis. Comput. Graph., May, 2024

Optimal Dielectric Boundary for Binding Free Energy Estimates in the Implicit Solvent.

Negin Forouzesh, Fatemeh Ghafouri, Igor S. Tolokh, Alexey V. Onufriev

J. Chem. Inf. Model., 2024

2023

AmberTools.

David A. Case, Hasan Metin Aktulga, Kellon Belfon, David S. Cerutti, G. Andrés Cisneros, Vinícius Wilian D. Cruzeiro, Negin Forouzesh, Timothy J. Giese, Andreas W. Götz, Holger Gohlke, Saeed Izadi, Koushik Kasavajhala, Mehmet Cagri Kaymak, Edward King, Tom Kurtzman, Tai-Sung Lee, Pengfei Li, Jian Liu, Tyler Luchko, Ray Luo, Madushanka Manathunga, Matías R. Machado, Hai Minh Nguyen, Kurt A. O'Hearn, Alexey V. Onufriev, Feng Pan, Sergio Pantano, Ruxi Qi, Ali Rahnamoun, Ali Risheh, Stephan Schott-Verdugo, Akhil Shajan, Jason M. Swails, Junmei Wang, Haixin Wei, Xiongwu Wu, Yongxian Wu, Shi Zhang, Shiji Zhao, Qiang Zhu, Thomas E. Cheatham, Daniel R. Roe, Adrian E. Roitberg, Carlos Simmerling, Darrin M. York, Maria C. Nagan, Kenneth M. Merz Jr.

J. Chem. Inf. Model., October, 2023

Physics-Guided Deep Generative Model For New Ligand Discovery.

Dikshant Sagar, Ali Risheh, Nida Sheikh, Negin Forouzesh

Proceedings of the 14th ACM International Conference on Bioinformatics, 2023

2022

Calculating the Binding Entropy of Host-Guest Systems with Physics-Guided Neural Networks.

Alles Rebel, Ali Risheh, Negin Massoudian, Negin Forouzesh

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Low Data Image Analysis with a Generative Adversarial Network: A Case Study on Women Pelvic MRI Scans.

Sabino Ramirez, Mathias Brieu, Negin Forouzesh

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021

Analysis of Macular Thickness Deviation Maps for Diagnosis of Glaucoma.

Bingnan Zhou, Farnaz Mohammadi, Jung Soo Lim, Negin Forouzesh, Hassan Ghasemzadeh, Navid Amini

Proceedings of the Advances in Visual Computing - 16th International Symposium, 2021

Calculation of Protein-Ligand Binding Free Energy Using a Physics-Guided Neural Network.

Sahar Cain, Ali Risheh, Negin Forouzesh

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020

Efficient Biomolecular Computations Towards Applications in Drug Discovery.

Negin Forouzesh

PhD thesis, 2020

Robustness of Multidimensional Optimization Outcomes: A General Approach and a Case Study.

Negin Forouzesh, Layne T. Watson, Alexey V. Onufriev

Proceedings of the Spring Simulation Conference, 2020

2017

Grid-Based Surface Generalized Born Model for Calculation of Electrostatic Binding Free Energies.

Negin Forouzesh, Saeed Izadi, Alexey V. Onufriev

J. Chem. Inf. Model., October, 2017

2014

Structure-Based Analysis of Protein Binding Pockets Using Von Neumann Entropy.

Negin Forouzesh, Mohammad Reza Kazemi, Ali Mohades

Proceedings of the Bioinformatics Research and Applications - 10th International Symposium, 2014