Hasan Metin Aktulga

According to our database1, Hasan Metin Aktulga authored at least 33 papers between 2007 and 2019.

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Bibliography

2019
Optimizing the performance of reactive molecular dynamics simulations for many-core architectures.
IJHPCA, 2019

Performance optimization of reactive molecular dynamics simulations with dynamic charge distribution models on distributed memory platforms.
Proceedings of the ACM International Conference on Supercomputing, 2019

Data Analysis for Atomic Shapes in Nuclear Science.
Proceedings of the Computational Science - ICCS 2019, 2019

2018
Accelerating nuclear configuration interaction calculations through a preconditioned block iterative eigensolver.
Computer Physics Communications, 2018

Scalable nuclear density functional theory with Sky3D.
Computer Physics Communications, 2018

Optimization of the Spherical Harmonics Transform based Tree Traversals in the Helmholtz FMM Algorithm.
Proceedings of the 47th International Conference on Parallel Processing, 2018

2017
Reactive Molecular Dynamics on Massively Parallel Heterogeneous Architectures.
IEEE Trans. Parallel Distrib. Syst., 2017

A High Performance Block Eigensolver for Nuclear Configuration Interaction Calculations.
IEEE Trans. Parallel Distrib. Syst., 2017

Optimizing the Performance of Reactive Molecular Dynamics Simulations for Multi-Core Architectures.
CoRR, 2017

2016
Accelerating Nuclear Configuration Interaction Calculations through a Preconditioned Block Iterative Eigensolver.
CoRR, 2016

Towards Fast Scalable Solvers for Charge Equilibration in Molecular Dynamics Applications.
Proceedings of the 7th Workshop on Latest Advances in Scalable Algorithms for Large-Scale Systems, 2016

Learning the Domain of Sparse Matrices.
Proceedings of the 15th IEEE International Conference on Machine Learning and Applications, 2016

2015
An Out-of-Core Task-based Middleware for Data-Intensive Scientific Computing.
Proceedings of the Handbook on Data Centers, 2015

Efficient global optimization of reactive force-field parameters.
Journal of Computational Chemistry, 2015

Performance analysis of distributed symmetric sparse matrix vector multiplication algorithm for multi-core architectures.
Concurrency and Computation: Practice and Experience, 2015

2014
Exploring the future of out-of-core computing with compute-local non-volatile memory.
Scientific Programming, 2014

Parallel eigenvalue calculation based on multiple shift-invert Lanczos and contour integral based spectral projection method.
Parallel Computing, 2014

PuReMD-GPU: A reactive molecular dynamics simulation package for GPUs.
J. Comput. Physics, 2014

Improving the scalability of a symmetric iterative eigensolver for multi-core platforms.
Concurrency and Computation: Practice and Experience, 2014

Optimizing Sparse Matrix-Multiple Vectors Multiplication for Nuclear Configuration Interaction Calculations.
Proceedings of the 2014 IEEE 28th International Parallel and Distributed Processing Symposium, 2014

2013
Exploring the future of out-of-core computing with compute-local non-volatile memory.
Proceedings of the International Conference for High Performance Computing, 2013

2012
Reactive Molecular Dynamics: Numerical Methods and Algorithmic Techniques.
SIAM J. Scientific Computing, 2012

Parallel reactive molecular dynamics: Numerical methods and algorithmic techniques.
Parallel Computing, 2012

An Out-of-Core Dataflow Middleware to Reduce the Cost of Large Scale Iterative Solvers.
Proceedings of the 41st International Conference on Parallel Processing Workshops, 2012

Topology-Aware Mappings for Large-Scale Eigenvalue Problems.
Proceedings of the Euro-Par 2012 Parallel Processing - 18th International Conference, 2012

An Out-of-Core Eigensolver on SSD-equipped Clusters.
Proceedings of the 2012 IEEE International Conference on Cluster Computing, 2012

2011
N-Body Computational Methods.
Proceedings of the Encyclopedia of Parallel Computing, 2011

Advancing Nuclear Physics Through TOPS Solvers and Tools
CoRR, 2011

Large-scale parallel null space calculation for nuclear configuration interaction.
Proceedings of the 2011 International Conference on High Performance Computing & Simulation, 2011

On Reducing I/O Overheads in Large-Scale Invariant Subspace Projections.
Proceedings of the Euro-Par 2011: Parallel Processing Workshops - CCPI, CGWS, HeteroPar, HiBB, HPCVirt, HPPC, HPSS, MDGS, ProPer, Resilience, UCHPC, VHPC, Bordeaux, France, August 29, 2011

2007
Identifying Statistical Dependence in Genomic Sequences via Mutual Information Estimates.
EURASIP J. Bioinformatics and Systems Biology, 2007

Identifying statistical dependence in genomic sequences via mutual information estimates
CoRR, 2007

Statistical Dependence in Biological Sequences.
Proceedings of the IEEE International Symposium on Information Theory, 2007


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