Kevin R. Coombes

Orcid: 0000-0002-7630-2123

According to our database1, Kevin R. Coombes authored at least 41 papers between 2001 and 2022.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2022
CEDA: integrating gene expression data with CRISPR-pooled screen data identifies essential genes with higher expression.
Bioinform., November, 2022

2021
A novel model to label delirium in an intensive care unit from clinician actions.
BMC Medical Informatics Decis. Mak., 2021

Simulation-derived best practices for clustering clinical data.
J. Biomed. Informatics, 2021

Pattern recognition in lymphoid malignancies using CytoGPS and Mercator.
BMC Bioinform., 2021

RCytoGPS: an R package for reading and visualizing cytogenetics data.
Bioinform., 2021

Mercator: a pipeline for multi-method, unsupervised visualization and distance generation.
Bioinform., 2021

2020
Explaining Gene Expression Using Twenty-One MicroRNAs.
J. Comput. Biol., 2020

Unsupervised machine learning and prognostic factors of survival in chronic lymphocytic leukemia.
J. Am. Medical Informatics Assoc., 2020

Generating simulated SNP array and sequencing data to assess genomic segmentation algorithms.
Int. J. Comput. Biol. Drug Des., 2020

Umpire 2.0: Simulating realistic, mixed-type, clinical data for machine learning.
F1000Research, 2020

CytoGPS: A Web-Enabled Karyotype Analysis Tool for Cytogeneticists and Biomedical Data Scientists.
Proceedings of the AMIA 2020, 2020

2019
A protocol to evaluate RNA sequencing normalization methods.
BMC Bioinform., 2019

Inferring clonal heterogeneity in cancer using SNP arrays and whole genome sequencing.
Bioinform., 2019

CytoGPS: a web-enabled karyotype analysis tool for cytogenetics.
Bioinform., 2019

2018
High Dimensional Data Enrichment: Interpretable, Fast, and Data-Efficient.
CoRR, 2018

Thresher: determining the number of clusters while removing outliers.
BMC Bioinform., 2018

IntLIM: integration using linear models of metabolomics and gene expression data.
BMC Bioinform., 2018

2016
Using Karyotype Data for Automated Disease Classification: A Proof of Concept Demonstration.
Proceedings of the Summit on Clinical Research Informatics, 2016

2015
drexplorer: A tool to explore dose-response relationships and drug-drug interactions.
Bioinform., 2015

Development of a robust classifier for quality control of reverse-phase protein arrays.
Bioinform., 2015

2014
Latent Feature Decompositions for Integrative Analysis of Multi-Platform Genomic Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2014

2013
SIBER: systematic identification of bimodally expressed genes using RNAseq data.
Bioinform., 2013

targetHub: a programmable interface for miRNA-gene interactions.
Bioinform., 2013

2012
Sources of variation in false discovery rate estimation include sample size, correlation, and inherent differences between groups.
BMC Bioinform., 2012

integIRTy: a method to identify genes altered in cancer by accounting for multiple mechanisms of regulation using item response theory.
Bioinform., 2012

Latent feature decompositions for integrative analysis of diverse high-throughput genomic data.
Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012

2009
Serial dilution curve: a new method for analysis of reverse phase protein array data.
Bioinform., 2009

Variable slope normalization of reverse phase protein arrays.
Bioinform., 2009

2008
Real-Time Gene Expression: Statistical Challenges in Design and Inference.
J. Comput. Biol., 2008

RPPAML/RIMS: A metadata format and an information management system for reverse phase protein arrays.
BMC Bioinform., 2008

2007
PrepMS: TOF MS data graphical preprocessing tool.
Bioinform., 2007

Non-parametric quantification of protein lysate arrays.
Bioinform., 2007

Enrichment analysis in high-throughput genomics - accounting for dependency in the NULL.
Briefings Bioinform., 2007

2006
Gene sequence signatures revealed by mining the UniGene affiliation network.
Bioinform., 2006

2005
Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum.
Bioinform., 2005

Applications of beta-mixture models in bioinformatics.
Bioinform., 2005

Analysis of dose-response effects on gene expression data with comparison of two microarray platforms.
Bioinform., 2005

2004
Differences in gene expression between B-cell chronic lymphocytic leukemia and normal B cells: a meta-analysis of three microarray studies.
Bioinform., 2004

Reproducibility of SELDI-TOF protein patterns in serum: comparing datasets from different experiments.
Bioinform., 2004

2002
Identifying and Quantifying Sources of Variation in Microarray Data Using High-Density cDNA Membrane Arrays.
J. Comput. Biol., 2002

2001
Identifying Differentially Expressed Genes in cDNA Microarray Experiments.
J. Comput. Biol., 2001


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