John M. Koomen

According to our database, John M. Koomen authored at least 5 papers between 2005 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Network models of protein phosphorylation, acetylation, and ubiquitination connect metabolic and cell signaling pathways in lung cancer.

Karen E. Ross, Guolin Zhang, Cuneyt Akcora, Yu Lin, Bin Fang, John M. Koomen, Eric B. Haura, Mark Grimes

PLoS Comput. Biol., March, 2023

2020

GMSimpute: a generalized two-step Lasso approach to impute missing values in label-free mass spectrum analysis.

Qian Li, Kate Fisher, Wenjun Meng, Bin Fang, Eric A. Welsh, Eric B. Haura, John M. Koomen, Steven A. Eschrich, Brooke L. Fridley, Yian Ann Chen

Bioinform., 2020

2008

IPEP: an <i>in silico</i> tool to examine proteolytic peptides for mass spectrometry.

Dihui Lu, Richard Z. Liu, Victoria Izumi, David A. Fenstermacher, Eric B. Haura, John M. Koomen, Steven Eschrich

Bioinform., 2008

2006

Statistical Characterization of Chemical Noise in MALDI TOF MS by Wavelet Analysis of Multiple Noise Realizations.

Hyunjin Shin, Mehul P. Sampat, Sheldon F. Bish, John M. Koomen, Mia K. Markey

Proceedings of the AMIA 2006, 2006

2005

Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum.

Jeffrey S. Morris, Kevin R. Coombes, John M. Koomen, Keith A. Baggerly, Ryuji Kobayashi

Bioinform., 2005